4u0y_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
reference	Fillenberg et al. 'Nucleic 43 1283 2015
source	Bacillus subtilis subsp. subtilis str. 168
experiment	X-ray (resolution=1.91, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4u0y_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4u0y_A interface=37,47,48,49, mninkqspipiyyqimeqlktqikngelqpdmplpsEreyaeqfgiSRMtvrqalsnlvnegllyrlkgrgtfvs > 4u0y_B interface=38,47,48,49,50,52, mninkqspipiyyqimeqlktqikngelqpdmplpseReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvs > 4u0y_C interface=37,47,48,49, mninkqspipiyyqimeqlktqikngelqpdmplpsEreyaeqfgiSRMtvrqalsnlvnegllyrlkgrgtfvs > 4u0y_D interface=37,46,47,48,49,51, ninkqspipiyyqimeqlktqikngelqpdmplpseReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvs
interface signature	ESRM/RSRMTR/ESRM/RSRMTR

Estimated binding specificities ?

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# IC=14.597 IC/col=1.043 n_of_columns=14

specificity:

A |   0   0   0   0   4  14   0  96  12  58   0   0  96   8
C |   0   0   0   0  12  58   0   0   8  12  96  96   0  87
G |  96   0  96  96   4  12   0   0  64  12   0   0   0   1
T |   0  96   0   0  76  12  96   0  12  14   0   0   0   0

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updated Wed Jun 24 22:44:20 2026