4u0y_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
reference	Fillenberg et al. 'Nucleic 43 1283 2015
source	Bacillus subtilis subsp. subtilis str. 168
experiment	X-ray (resolution=1.91, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4u0y_A interface=37,47,48,49, mninkqspipiyyqimeqlktqikngelqpdmplpsEreyaeqfgiSRMtvrqalsnlvnegllyrlkgrgtfvs > 4u0y_B interface=38,47,48,49,50,52, mninkqspipiyyqimeqlktqikngelqpdmplpseReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvs > 4u0y_C interface=37,47,48,49, mninkqspipiyyqimeqlktqikngelqpdmplpsEreyaeqfgiSRMtvrqalsnlvnegllyrlkgrgtfvs > 4u0y_D interface=37,46,47,48,49,51, ninkqspipiyyqimeqlktqikngelqpdmplpseReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvs
interface signature	ESRM/RSRMTR/ESRM/RSRMTR

Estimated binding specificities ?

readout + contact

# IC=14.646 IC/col=1.046 n_of_columns=14

specificity:

A |   0   0   0   0  10  13   0  96   8  71   0   0  96   0
C |   1   0   0   0  13  57   0   0  13   4  96  96   0  96
G |  91   0  96  96   8  13   0   0  61  13   0   0   0   0
T |   4  96   0   0  65  13  96   0  14   8   0   0   0   0

scan!

home
updated Fri Dec 13 21:25:17 2024