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structure nameCRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
referenceFillenberg et al. 'Nucleic 43 1283 2015
sourceBacillus subtilis subsp. subtilis str. 168
experimentX-ray (resolution=1.91, R-factor=?)
structural superfamily"Winged helix" DNA-binding domain;
reference complex4u0y_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureESRM/RSRMTR/ESRM/RSRMTR

Estimated binding specificities ?

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# IC=14.607 IC/col=1.043 n_of_columns=14 specificity:   
A |   0   0   0   0   6   9   0  96  11  64   0   0  96  14
C |   0   0   0   0  13  54   0   0   4  10  96  96   0  82
G |  96   0  96  96   4  18   0   0  68   9   0   0   0   0
T |   0  96   0   0  73  15  96   0  13  13   0   0   0   0
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updated Wed Jul 30 02:53:59 2025