4u0y_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
reference	Fillenberg et al. 'Nucleic 43 1283 2015
source	Bacillus subtilis subsp. subtilis str. 168
experiment	X-ray (resolution=1.91, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4u0y_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4u0y_A interface=37,47,48,49, mninkqspipiyyqimeqlktqikngelqpdmplpsEreyaeqfgiSRMtvrqalsnlvnegllyrlkgrgtfvs > 4u0y_B interface=38,47,48,49,50,52, mninkqspipiyyqimeqlktqikngelqpdmplpseReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvs > 4u0y_C interface=37,47,48,49, mninkqspipiyyqimeqlktqikngelqpdmplpsEreyaeqfgiSRMtvrqalsnlvnegllyrlkgrgtfvs > 4u0y_D interface=37,46,47,48,49,51, ninkqspipiyyqimeqlktqikngelqpdmplpseReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvs
interface signature	ESRM/RSRMTR/ESRM/RSRMTR

Estimated binding specificities ?

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# IC=14.738 IC/col=1.053 n_of_columns=14

specificity:

A |   0   0   0   0   4  13   0  96  14  69   0   0  96   8
C |   0   0   0   0  13  52   0   0   4   4  96  96   0  87
G |  96   0  96  96   5  17   0   0  65  10   0   0   0   0
T |   0  96   0   0  74  14  96   0  13  13   0   0   0   1

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updated Mon Sep 9 23:38:59 2024