| structure name | CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA (HTH-type transcriptional repressor YvoA) |
| reference | Fillenberg et al. 'Nucleic 43 1283 2015 |
| source | Bacillus subtilis subsp. subtilis str. 168 |
| experiment | X-ray (resolution=1.91, R-factor=0.181) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Bacterial regulatory proteins, gntR family; |
| multimeric complexes | 4u0y_ABCD 4wwc_AB |
| redundant complexes |  4wwc_B
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RSRMTR |
Estimated binding specificities ?
| contact |  |
A | 6 0 0 6 18 0 84 C | 0 0 0 18 48 0 6 G | 6 96 96 6 24 6 6 T | 84 0 0 66 6 90 0scan! |
Dendrogram of similar interfaces ?
matrix format--VTSARGTA--RT------ L +-------------------6za3_B +----1 --------------RCYGKT +----2 +-------------------2acj_B ! ! ----ITRGECSCSGKG---- L +-3 +------------------------5i2d_R ! ! RC--EGRTRGRGYT------ L --4 +-----------------------------4yo2_A ! ----------------YG-- +-----------------------------3eyi_B |
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updated Sat Jan 10 07:28:32 2026