| structure name | CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA (HTH-type transcriptional repressor YvoA) |
| reference | Fillenberg et al. 'Nucleic 43 1283 2015 |
| source | Bacillus subtilis subsp. subtilis str. 168 |
| experiment | X-ray (resolution=1.91, R-factor=0.181) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Bacterial regulatory proteins, gntR family; |
| multimeric complexes | 4u0y_ABCD |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RSRMTR |
Estimated binding specificities ?
| contact |  |
A | 4 0 0 4 10 4 82 C | 6 0 0 17 56 4 4 G | 4 96 96 4 13 4 6 T | 82 0 0 71 17 84 4scan! |
Dendrogram of similar interfaces ?
matrix format--VTSARGTA--RT---- L +-----------------------------6za3_B +-1 ----ITRGECSCSGKG-- L +-2 +-----------------------------5i2d_R ! ! RC--EGRTRGRGYT---- L --3 +-----------------------------4yo2_A ! ----------------YG +-----------------------------3eyi_B |
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updated Sun Aug 3 08:29:48 2025