4uzb_AB : 3D-footprint complex

structure name	KSHV LANA (ORF73) C-TERMINAL DOMAIN MUTANT BOUND TO LBS1 DNA (R1039Q, R1040Q, K1055E, K1109A, D1110A, A1121E, K1138S, K1140D, K1141D)
reference	Hellert et al.
source	HUMAN HERPESVIRUS 8
experiment	X-ray (resolution=2.87, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4uzb_A interface=3,4,21,57,61,119, phPRyqqppvpyrqiddcpaKarpqhifyqqflgkdgrrdpkcqwefavifwgndpYglkKlsqafqfggvkagpvsclphpgpdqspitycvyvycqnaatskkvqmarleweashpLagnlqssivsfddplplt > 4uzb_B interface=2,3,4,5,21, pHPRYqqppvpyrqiddcpaKarpqhifyqqflgkdgrrdpkcqwefavifwgndpyglkklsqafqfggvkagpvsclphpgpdqspitycvyvycqnaatskkvqmarleweashplagnlqssivsfddplplt
interface signature	PRKYKL/HPRYK

Estimated binding specificities ?

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# IC=11.776 IC/col=0.906 n_of_columns=13

specificity:

A |   0   0   0   0   0   8   8  80   0  12  24   8   0
C |  96  96  96   0   0  12  76   8   4  12  24   8   0
G |   0   0   0  96  96  68   4   4   0  60  24  68  96
T |   0   0   0   0   0   8   8   4  92  12  24  12   0

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updated Fri Dec 13 21:26:16 2024