4uzb_AB : 3D-footprint complex

structure name	KSHV LANA (ORF73) C-TERMINAL DOMAIN MUTANT BOUND TO LBS1 DNA (R1039Q, R1040Q, K1055E, K1109A, D1110A, A1121E, K1138S, K1140D, K1141D)
reference	Hellert et al.
source	HUMAN HERPESVIRUS 8
experiment	X-ray (resolution=2.87, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	4uzb_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4uzb_A interface=3,4,21,57,61,119, phPRyqqppvpyrqiddcpaKarpqhifyqqflgkdgrrdpkcqwefavifwgndpYglkKlsqafqfggvkagpvsclphpgpdqspitycvyvycqnaatskkvqmarleweashpLagnlqssivsfddplplt > 4uzb_B interface=2,3,4,5,21, pHPRYqqppvpyrqiddcpaKarpqhifyqqflgkdgrrdpkcqwefavifwgndpyglkklsqafqfggvkagpvsclphpgpdqspitycvyvycqnaatskkvqmarleweashplagnlqssivsfddplplt
interface signature	PRKYKL/HPRYK

Estimated binding specificities ?

readout + contact

# IC=11.680 IC/col=0.898 n_of_columns=13

specificity:

A |   0   8  24  12  92   4   4  12   0   0   0   0   0
C |  96  64  24  64   0   8   8  60  96  96   0   0   0
G |   0  12  24   8   4   8  80   4   0   0  96  96  96
T |   0  12  24  12   0  76   4  20   0   0   0   0   0

scan!

home
updated Wed Jul 30 02:54:53 2025