4wu4_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF E. FAECALIS DNA BINDING DOMAIN LIARD191N COMPLEXED WITH 22BP DNA
reference	Davlieva et al. 'Nucleic 43 4758 2015
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	4wuh_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4wu4_A interface=36,39,43, mvlhedltnreheilmliaqgksnqeiadelfitlKtvKthvSnilakldvdnrtqaaiyafqhglak > 4wu4_B interface=34,36,37,39,40,41,44, mvlhedltnreheilmliaqgksnqeiadelfiTlKTvKTHvsNilakldvdnrtqaaiyafqhglak
interface signature	KKS/TKTKTHN

Estimated binding specificities ?

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# IC=8.102 IC/col=0.579 n_of_columns=14

specificity:

A |   0  16  24   4  16  24  24  24   0  24  66   0   9  96
C |   0   8  24  72  16  24  24  24   0  24   4  96   0   0
G |  96  58  24   8   6  24  24  24  96  24  25   0  87   0
T |   0  14  24  12  58  24  24  24   0  24   1   0   0   0

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updated Mon Sep 9 23:48:36 2024