4wuh_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF E. FAECALIS DNA BINDING DOMAIN LIAR WILD TYPE COMPLEXED WITH 22BP DNA (Response regulator receiver domain protein)
reference	Davlieva et al. 'Nucleic 43 4758 2015
source	Enterococcus faecalis S613
experiment	X-ray (resolution=2.29, R-factor=0.219)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
sequence family	Bacterial regulatory proteins, luxR fami; Sigma70, region 4;
multimeric complexes	4wu4_AB 4wul_AB
redundant complexes	4wu4_A 4wul_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4wuh_B interface=36,37,39,40,41, mvlhedltnreheilmliaqgksnqeiadelfitlKTvKTHvsnilakldvdnrtqaaiyafqhglak
interface signature	KTKTH

Estimated binding specificities ?

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# IC=5.849 IC/col=0.836 n_of_columns=7

specificity:

A |   0   0   0  13  24   0  13
C |   0  96   0  13  24  96  13
G |   0   0  96  13  24   0  13
T |  96   0   0  57  24   0  57

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Dendrogram of similar interfaces ?

matrix format

  
  --KGTG--KANGYAST--   L       +-----------------------------1zlk_A    
                             +-1 
  ----ST--TAQC--ST--       +-2 +-----------------------------8b4b_W    
                           ! ! 
  NTHG--RT--YTPT----   L --3 +-----------------------------6qil_A    
                           ! 
  --RGTC--DCVA--RGRC   L   +-----------------------------8hih_Q

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updated Sun Aug 3 08:33:54 2025