4wwc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FULL LENGTH YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
reference	Fillenberg et al. 'Nucleic 43 1283 2015
source	Bacillus subtilis
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4u0y_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4wwc_A interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmqgltsftedmksrgmtpgsrlidyqlidsteelaailgcghssihkitrvrlandipmaiesshipfeisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymdrl > 4wwc_B interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmeqgltsftedmksrgmtpgsrlidyqlidseelaailgcgpssihkitrvrlandipmaiesshipfelagelnesiydhierynsipisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymd
interface signature	ERSRMTR/ERSRMTR

Estimated binding specificities ?

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# IC=13.700 IC/col=0.913 n_of_columns=15

specificity:

A |   0  61  36   6   0   0   6  24   0  96   7  92   0   0  85
C |  96   5   2   5   0   0   6  24   0   0  26   0  96  96   6
G |   0  26  42  16  96  96   2  24   0   0  53   0   0   0   3
T |   0   4  16  69   0   0  82  24  96   0  10   4   0   0   2

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updated Mon Jan 5 11:28:40 2026