4wwc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FULL LENGTH YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
reference	Fillenberg et al. 'Nucleic 43 1283 2015
source	Bacillus subtilis
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Chorismate lyase-like;"Winged helix" DNA-binding domain;
reference complex	4wwc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4wwc_A interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmqgltsftedmksrgmtpgsrlidyqlidsteelaailgcghssihkitrvrlandipmaiesshipfeisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymdrl > 4wwc_B interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmeqgltsftedmksrgmtpgsrlidyqlidseelaailgcgpssihkitrvrlandipmaiesshipfelagelnesiydhierynsipisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymd
interface signature	ERSRMTR/ERSRMTR

Estimated binding specificities ?

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# IC=11.206 IC/col=0.934 n_of_columns=12

specificity:

A |   6   0   0   0   6   0  96  24  78   0   0  60
C |   6   0   0   6  66   0   0  24   6  96  96  12
G |   6  96  96   0  12   0   0  24   6   0   0  12
T |  78   0   0  90  12  96   0  24   6   0   0  12

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updated Mon Sep 9 23:56:39 2024