4wwc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FULL LENGTH YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
reference	Fillenberg et al. 'Nucleic 43 1283 2015
source	Bacillus subtilis
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Chorismate lyase-like;"Winged helix" DNA-binding domain;
reference complex	4wwc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4wwc_A interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmqgltsftedmksrgmtpgsrlidyqlidsteelaailgcghssihkitrvrlandipmaiesshipfeisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymdrl > 4wwc_B interface=38,39,48,49,50,51,53, hmninkqspipiyyqimeqlktqikngelqpdmplpsEReyaeqfgiSRMTvRqalsnlvnegllyrlkgrgtfvskpkmeqgltsftedmksrgmtpgsrlidyqlidseelaailgcgpssihkitrvrlandipmaiesshipfelagelnesiydhierynsipisrakqelepsaatteeanilgiqkgapvllikrttylqngtafehaksvyrgdrytfvhymd
interface signature	ERSRMTR/ERSRMTR

Estimated binding specificities ?

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# IC=14.050 IC/col=0.937 n_of_columns=15

specificity:

A |   0  58  30  15   0   0   3  24   0  96  19  95   0   0  91
C |  96   5  15   5   0   0   1  24   0   0  13   0  96  96   3
G |   0  28  46   7  96  96   2  24   0   0  48   0   0   0   1
T |   0   5   5  69   0   0  90  24  96   0  16   1   0   0   1

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updated Wed Jul 30 03:12:41 2025