interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Related DNA sequences reported in the literature ?


structure nameCRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP AND NC2 BOUND TO A PROMOTER DNA FRAGMENT
(ECU11_1470 PROTEIN)
referenceHopfner et al. Elife 4 ? 2015
sourceENCEPHALITOZOON CUNICULI (STRAIN GB-M1) / ENCEPHALITOZOON CUNICULI (STRAIN GB-M1)
experimentX-ray (resolution=3.78, R-factor=0.236)
structural superfamilyHistone-fold;
multimeric complexes4wzs_ABD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
sitesourcematches (E-value)
term: TBP
TATAAAAGPubMed4wzs_ABD(1.10e-13)
TATAAAPubMed4wzs_ABD(1.19e-08)
TGTAAAPubMed4wzs_ABD(3.30e-04)
TATTTAAAPubMed4wzs_ABD(6.57e-03)
CTTTTPubMed4wzs_ABD(3.63e-06)
TATAAPubMed4wzs_ABD(3.62e-06)
GGGTATAAAAGGPubMed4wzs_ABD(3.37e-10)
AATAAAAGPubMed4wzs_ABD(2.06e-09)
TAAAAAPubMed4wzs_ABD(3.91e-05)
TATATAAPubMed4wzs_ABD(6.03e-06)
CATAAAPubMed4wzs_ABD(3.91e-05)
TATATAPubMed4wzs_ABD(3.30e-04)
sitesourcematches (E-value)

Dendrogram of similar interfaces ?

matrix format
  
  RT                                 +1u35_G    
                +--------------------1 
  RA       +----4                    +1kx5_G    
           !    ! 
  RT       !    +--------------------8byq_e    
         --5 
  RT       !                        +7zs9_e    
           !          +-------------2 
  RC       +----------3             +6jm9_A    
                      ! 
  RC                  +--------------3kwq_E

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updated Fri Sep 13 18:55:25 2024