4y5w_AC : 3D-footprint complex

structure name	TRANSCRIPTION FACTOR-DNA COMPLEX
reference	Ouyang et al. Proc.Natl.Acad.Sci.USA 113 13015 2016
source	Homo sapiens
experiment	X-ray (resolution=3.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4y5w_A interface=203,241,242,244,245, kfktglrrlqhrvgeihllrealqkalamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggetrasltgrldevlrtlvtscflvekqppqvlktqtkfqagvrfllglrflgpakpplvradmvtekqaretgeiinntvplensipgnccsalfknlllkkikrceRkgtesvteekcavlfsasftlglpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve > 4y5w_C interface=127,234,235, kfktglrrlqhrvgeihllrealqkealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaagtrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrflgapakpplvradmvtekqaretgeiinntvplensipgnccsalfknlllkkikrcsvteekcavlfsasftlgpiqlqalslplvviVHgnqdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvigspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmggrgvpatikmtve
interface signature	RVHNQ/KVH

Estimated binding specificities ?

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# IC=6.499 IC/col=0.464 n_of_columns=14

specificity:

A |   0   8  24  24   0   0  96  72  24  24  24  24  24  69
C |  96  69  24  24   0   1   0   8  24  24  24  24  24   8
G |   0   8  24  24  96  87   0   8  24  24  24  24  24   8
T |   0  11  24  24   0   8   0   8  24  24  24  24  24  11

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updated Fri Dec 13 22:24:49 2024