4y5w_BD : 3D-footprint complex

structure name	TRANSCRIPTION FACTOR-DNA COMPLEX
reference	Ouyang et al. Proc.Natl.Acad.Sci.USA 113 13015 2016
source	Homo sapiens
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	p53-like transcription factors;SH2 domain;STAT;
reference complex	4y5w_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4y5w_B interface=203,240,241,243,244, kfktglrrlqhrvgeihllrealqkalamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaagtrasltgrldevlrtlvtscflvekqppqvlktqtkfqagvrfllglrflgapakpplvradmvtekqaretgeiinntvplensipgnccsalfknlllkkikrcerKgtesvteekcavlfsasftlgppiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve > 4y5w_D interface=130,241,242,245, kfktglrrlqhrvgeihllrealqkealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggeltrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrflgapakpplvradmvtekqaretgeiinntvplensipgnccsalfknlllkkikrcegtesvteekcavlfsasftlgpiqlqalslplvviVHgnQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvigspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmggrgvpatikmtve
interface signature	KVHNQ/KVHQ

Estimated binding specificities ?

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# IC=8.247 IC/col=0.589 n_of_columns=14

specificity:

A |  12   0  12  24   0   0  96  84  24  24  24  24  24  96
C |  60  96  12  24   0   0   0  12  24  24  24  24  24   0
G |  12   0  12  24  96  96   0   0  24  24  24  24  24   0
T |  12   0  60  24   0   0   0   0  24  24  24  24  24   0

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updated Tue Sep 10 00:34:27 2024