4yg7_BCDEGK : 3D-footprint complex

structure name	STRUCTURE OF FL AUTOREPRESSION PROMOTER COMPLEX
reference	Nature 524 59 2015 X-RAY DIFFRACTION
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	X-ray (resolution=3.77, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	4z5h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4yg7_B interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcd > 4yg7_C interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak > 4yg7_D interface= pklvtwmnnqrvgeltklangahtfKyapewlasRYArpLslslplqrgnitsdavfnffdnllpdspivrdrivkryhaksrqpfdllseigrdsvgavtlipedetvthpimawekltearleevltaykadfrisvagaqektallrigndwcipkgitptthiiklpilsqsvdneyyclllakelglnvpdaeiikagnvralaverfdrrwnaertvllrlpqedmcqtfglpssvkyesdggpgiarimaflmgssealkdrydfmkfqvfqwligatqghaknfsvfiqaggsyrltpfydiisafpvlggtgihisdlklamglnaskgkktaidkiyprhflatakvlrfpevqmheilsdfarmipaaldnvktslptdfpenvvtavesnvlrlhgrlsrey > 4yg7_E interface=35,36,40, fqkiysptqlanamklvrqqngwtqselakkigiKQatiSnfennpdnttlttffkilqslelsmtlcd > 4yg7_G interface=25,26,35,36,37,40, fqkiysptqlanamklvrqqngwtQSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak > 4yg7_K interface= pklvtwmnnqrvgeltklangahtFKyapewlasRYArpLslslplqrgnitsdavfnffdnllpdspivrdrivkryhaksrqpfdllseigrdsvgavtlipedetvthpimawekltearleevltaykarisvagaqektallrigndwcipkgitptthiiklpilsqsvdneyyclllakelglnvpdaeiikagnvralaverfdrrwnaertvllrlpqedmcqtfglpssvkyesdggpgiarimaflmgssealkdrydfmkfqvfqwligatqghaknfsvfiqaggsyrltpfydiisafpvlggtgihisdlklamglnaskgkktaidkiyprhflatakvlrfpevqmheilsdfarmipaaldnvktslptdfpenvvtavesnvlrlhgrlsrey
interface signature	SKQAS/SKQAS/KRYAL/KQS/QSKQAS/FKRYAL

Estimated binding specificities ?

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# IC=19.812 IC/col=0.483 n_of_columns=41

specificity:

A |  87   2   0   0   0  24  24  24  24  24  11   0  24  24   2  87  24  24  24  24  24  24  24  24  24  24   0  96   2   3   8  24  24  24  24  24   2   3  24   0  96
C |   3   2  96  96  96  24  24  24  24  24  10   0  24  24   2   2  24  24  24  24  24  24  24  24  24  24   0   0   2  89  71  24  24  24  24  24   2   2  24   0   0
G |   4   2   0   0   0  24  24  24  24  24  69  96  24  24   3   5  24  24  24  24  24  24  24  24  24  24   0   0   2   2  11  24  24  24  24  24  90  89  24   0   0
T |   2  90   0   0   0  24  24  24  24  24   6   0  24  24  89   2  24  24  24  24  24  24  24  24  24  24  96   0  90   2   6  24  24  24  24  24   2   2  24  96   0

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updated Tue Sep 10 00:36:57 2024