interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF RAD4-RAD23 CROSSLINKED TO AN UNDAMAGED DNA
referenceMin et al. 'Nat 6 5849 2015
experimentX-ray (resolution=3.05, R-factor=0.197)
structural superfamilyCysteine proteinases;
sequence familyRad4 transglutaminaselike domain; Rad4 betahairpin domain 3; Rad4 betahairpin domain 1; Rad4 betahairpin domain 2;
reference complex2qsh_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRRMNFNEVFFETKP

Estimated binding specificities ?

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# IC=4.874 IC/col=0.487 n_of_columns=10 specificity:   
A |  52  22  24  24  24  24   0   0   0   6
C |  14  27  24  24  24  24  96  96  96   6
G |  14  25  24  24  24  24   0   0   0  78
T |  16  22  24  24  24  24   0   0   0   6
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updated Thu Sep 12 20:19:15 2024