2qsh_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RAD4-RAD23 BOUND TO A MISMATCH DNA (DNA REPAIR PROTEIN RAD4)
reference	Pavletich et al. Nature 449 570 2007
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.81, R-factor=0.211)
structural superfamily	Cysteine proteinases;
sequence family	Rad4 transglutaminaselike domain; Rad4 betahairpin domain 3; Rad4 betahairpin domain 1; Rad4 betahairpin domain 2;
redundant complexes	2qsg_A 4yir_A 6cfi_A 6ubf_A 6ug1_A 6uin_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2qsh_A interface=7,350,372,373,376,424,426,428,430,464,467,469,471,474,476,477, darrtsRnvcsneerkrrkyfhmlylvclmvhgfirnewinskrlsrklsnlvpekvfellhpqkdeelplrstrklldglkkcmelwqkhwkitkkydneglymrtwkeiemsannkrkfktlkrsdflravskghgdpdisvqgfvamlracnvnarlimscqppdftnmkidtslngnnaykdmvkypifwcevwdkfskkwitvdpvnlktieqvrlhsklapkgvaccernmlryviaydrkygcrdvtrryaqwmnskvrkrritkddfgekwfrkvitalhhrkrtkiddyedqyffqrdesegipdsvqdlknhpyyvleqdikqtqivkpgckecgylkvHgkvgkvlkvyakrdiadlksaRQwyMngrilktgsrckkvikrtveederlysfedtelyipplasasgeitkNtFgNiEvfaptmipgncclvenpvaikaarflgvefapaVtsFkFeRgsTvKPvlsgivvakwlreaietaidgiefi
interface signature	RHRQMNFNEVFFRTKP

Estimated binding specificities ?

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# IC=4.434 IC/col=0.296 n_of_columns=15

specificity:

A |   0   0   0  24  24  24  24  24  24  16  24  24  24  24  13
C |  96   0   0  24  24  24  24  24  24  13  24  24  24  24  54
G |   0   0   0  24  24  24  24  24  24  13  24  24  24  24  16
T |   0  96  96  24  24  24  24  24  24  54  24  24  24  24  13

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updated Fri Sep 13 16:40:08 2024