4yj0_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DM DOMAIN OF HUMAN DMRT1 BOUND TO 25MER TARGET DNA
reference	Gearhart et al. Nat.Struct.Mol.Biol. 22 442 2015
source	Homo sapiens
experiment	X-ray (resolution=3.81, R-factor=?)
structural superfamily	Cysteine-rich DNA binding domain, DM domain;
reference complex	4yj0_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4yj0_A interface=42, sprlpkcarcrnhgyasplkghkrfcmwrdcqckkcnliaeRqrvmaaqvalrrqqaqeeel > 4yj0_B interface=4,43,47,51,54,55, kspRlpkcarcrnhgyasplkghkrfcmwrdcqckkcnliaeRqrvMaaqValRRqqaqeeel > 4yj0_C interface=4,43,47,50,51,54,55, kspRlpkcarcrnhgyasplkghkrfcmwrdcqckkcnliaeRqrvMaaQValRRqqaqeeel
interface signature	R/RRMVRR/RRMQVRR

Estimated binding specificities ?

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# IC=9.477 IC/col=0.862 n_of_columns=11

specificity:

A |  83   8  96   0  79  24   5   0   5   0   6
C |   5   8   0  96   5  24   4   0   0   8   4
G |   4   4   0   0   8  24   4  96   4   1  66
T |   4  76   0   0   4  24  83   0  87  87  20

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updated Tue Sep 10 00:37:48 2024