4z5d_AB : 3D-footprint complex

structure name	HIPB-O4 21MER COMPLEX
reference	Schumacher et al. 'To ? ? ?
source	Escherichia coli
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	4z5h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4z5d_A interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak > 4z5d_B interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak
interface signature	SKQAS/SKQAS

Estimated binding specificities ?

readout + contact

# IC=11.435 IC/col=0.635 n_of_columns=18

specificity:

A |   3  96  17   0   0  31  24  24  24  24  24  24   8   0   0  62   0  87
C |   0   0   4  96  96   2  24  24  24  24  24  24  60   0   0  11   0   1
G |   0   0  26   0   0  51  24  24  24  24  24  24   8  96  96   8   0   4
T |  93   0  49   0   0  12  24  24  24  24  24  24  20   0   0  15  96   4

scan!

home
updated Mon Jan 5 13:04:30 2026