4z5d_AB : 3D-footprint complex

structure name	HIPB-O4 21MER COMPLEX
reference	Schumacher et al. 'To ? ? ?
source	Escherichia coli
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	4z5h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4z5d_A interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak > 4z5d_B interface=26,35,36,37,40, fqkiysptqlanamklvrqqngwtqSelakkigiKQAtiSnfennpdnttlttffkilqslelsmtlcdak
interface signature	SKQAS/SKQAS

Estimated binding specificities ?

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# IC=11.630 IC/col=0.646 n_of_columns=18

specificity:

A |   3  96   7   0   0  11  24  24  24  24  24  24  22   0   0  55   0  87
C |   0   0  10  96  96   2  24  24  24  24  24  24  34   0   0  25   0   2
G |   0   0  24   0   0  79  24  24  24  24  24  24   6  96  96   6   0   2
T |  93   0  55   0   0   4  24  24  24  24  24  24  34   0   0  10  96   5

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updated Tue Sep 10 01:14:20 2024