5a72_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX WITH ITS TARGET (SRO1.3) IN THE PRESENCE OF 2 MM CA
reference	LopezMendez et al. J.Biol.Chem. 290 28727 2015
source	CHLORELLA VULGARIS
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	5a78_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5a72_A interface=20,24,26,28,30,31,38,44,66,68,69,70,72,74,76,138, nfhdqlkfawlagfvdadgCinaQiVsReDYllkyqvRvsltvFqsttqhfilldiqkilgcgtvRkRNDgMsEfCvvggtslqttlekllpylnlkraqaklvlqiikklpntkdpsvlmeaalladkvglltdgkKrtilaenvreclkklghvv > 5a72_B interface=20,24,26,28,30,31,38,44,66,68,69,70,72,74,138, nfhdqlkfawlagfvdadgCinaQiVsReDYllkyqvRvsltvFqsttqhfilldiqkilgcgtvRkRNDgMsEfcvvggtslqttlekllpylnlkraqaklvlqiikklpntkdpsvlmeaalladkvglltdgkKrtilaenvreclkklghvvs
interface signature	CQVRDYRFRRNDMECK/CQVRDYRFRRNDMEK

Estimated binding specificities ?

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# IC=25.387 IC/col=1.154 n_of_columns=22

specificity:

A |   0  96   0  34  96   0   0   0   0   3   3  74   0   0  96   0   0   0  51   0   0   0
C |  96   0   0   3   0  96   0   0  96   0  10   6   7   0   0  96   0   0   9  96   0   0
G |   0   0  96   6   0   0  96   6   0  93   3  10   0  96   0   0  96   0   9   0   0  96
T |   0   0   0  53   0   0   0  90   0   0  80   6  89   0   0   0   0  96  27   0  96   0

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updated Tue Sep 10 01:28:02 2024