5a78_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX WITH I- CREI TARGET (C1221) IN THE PRESENCE OF 2 MM MG REVEALING DNA NOT CLEAVED
reference	LopezMendez et al. J.Biol.Chem. 290 28727 2015
source	CHLORELLA VULGARIS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	5a78_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5a78_A interface=24,26,28,30,31,36,38,44,66,68,69,70,72,74,138, nfhdqlkfawlagfvdadgcinaQiVsReDYllkyQvRvsltvFqsttqhfilldiqkilgcgtvRkRNDgMsEfcvvggtslqttlekllpylqlkraqaklvlqiikklpntkdpsvlmeaalladkvglltdgkKrtilaenvreclkklghvv > 5a78_B interface=20,24,26,28,30,31,36,38,44,66,68,69,70,72,74,138, nfhdqlkfawlagfvdadgCinaQiVsReDYllkyQvRvsltvFqsttqhfilldiqkilgcgtvRkRNDgMsEfcvvggtslqttlekllpylqlkraqaklvlqiikklpntkdpsvlmeaalladkvglltdgkKrtilaenvreclkklghvvs
interface signature	QVRDYQRFRRNDMEK/CQVRDYQRFRRNDMEK

Estimated binding specificities ?

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# IC=25.393 IC/col=1.154 n_of_columns=22

specificity:

A |   0  92  96  92  96   0   0   3   3   3   3  84   0   0  96   0   0   7  84   0   3   0
C |  96   0   0   1   0  96   0   0  93   6   7   3  88   0   0  96   0   3   3   0   5   0
G |   0   3   0   0   0   0  96   5   0  84   3   3   3  96   0   0  96   5   6   0   0  96
T |   0   1   0   3   0   0   0  88   0   3  83   6   5   0   0   0   0  81   3  96  88   0

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updated Tue Sep 10 01:28:18 2024