5cbx_AB : 3D-footprint complex

structure name	ANCGR DNA BINDING DOMAIN - (+)GRE COMPLEX
reference	Ortlund et al. Proc.Natl.Acad.Sci.USA 113 326 2016
source	UNCLASSIFIED
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	5cbx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5cbx_A interface=24,25,29, kiclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrfrkclqagmnlea > 5cbx_B interface=26,27,31, ppkiclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrfrkclqagmnlea
interface signature	KVR/KVR

Estimated binding specificities ?

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# IC=6.672 IC/col=0.513 n_of_columns=13

specificity:

A |   9  24  24   0  96  24  24  24   0   0  11  24   9
C |  11  24  24  96   0  24  24  24   0   0   9  24  69
G |  67  24  24   0   0  24  24  24   0  96   9  24   9
T |   9  24  24   0   0  24  24  24  96   0  67  24   9

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updated Tue Sep 10 02:55:13 2024