5cby_AB : 3D-footprint complex

structure name	ANCGR2 DNA BINDING DOMAIN - (+)GRE COMPLEX
reference	Ortlund et al. Proc.Natl.Acad.Sci.USA 113 326 2016
source	UNCLASSIFIED
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	5cbx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5cby_A interface=26,27,31, ppkiclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrfrkclqagmnleark > 5cby_B interface=25,26,30, pkiclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrfrkclqagmnle
interface signature	KVR/KVR

Estimated binding specificities ?

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# IC=6.729 IC/col=0.518 n_of_columns=13

specificity:

A |  10  24  24   0  64  24  24  24   0   0  12  24   0
C |   0  24  24  96  12  24  24  24   0   0  10  24  86
G |  85  24  24   0  10  24  24  24   0  96  10  24   0
T |   1  24  24   0  10  24  24  24  96   0  64  24  10

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updated Sat Dec 14 00:57:12 2024