5cbz_AB : 3D-footprint complex

structure name	ANCMR DNA BINDING DOMAIN - (+)GRE COMPLEX
reference	Ortlund et al. Proc.Natl.Acad.Sci.USA 113 326 2016
source	UNIDENTIFIED
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	5cbz_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5cbz_A interface=25,26,30, skvclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrlrkclqagmnlga > 5cbz_B interface=25,26,30, skvclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrlrkclqagmnlgar
interface signature	KVR/KVR

Estimated binding specificities ?

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# IC=6.476 IC/col=0.498 n_of_columns=13

specificity:

A |   9  24  24   0  78  24  24  24   8   0   8  24   1
C |   0  24  24  96   0  24  24  24   8   0   8  24  87
G |  87  24  24   0   8  24  24  24   8  96  11  24   0
T |   0  24  24   0  10  24  24  24  72   0  69  24   8

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updated Tue Sep 10 02:55:39 2024