5cbz_EF : 3D-footprint complex

structure name	ANCMR DNA BINDING DOMAIN - (+)GRE COMPLEX
reference	Ortlund et al. Proc.Natl.Acad.Sci.USA 113 326 2016
source	UNIDENTIFIED
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	5cbz_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5cbz_E interface=27,28,32, ppskvclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrlrkclqagmnlgar > 5cbz_F interface=26,27,31, pskvclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrlrkclqagmnlg
interface signature	KVR/KVR

Estimated binding specificities ?

readout + contact

# IC=7.601 IC/col=0.585 n_of_columns=13

specificity:

A |   8  24  71   0  78  24  24  24   0   0   8  24  17
C |   0  24   0  96   0  24  24  24   0   0  17  24  78
G |  87  24   8   0   8  24  24  24   0  96   8  24   0
T |   1  24  17   0  10  24  24  24  96   0  63  24   1

scan!

home
updated Sat Dec 14 00:57:31 2024