5cbz_EF : 3D-footprint complex

structure name	ANCMR DNA BINDING DOMAIN - (+)GRE COMPLEX
reference	Ortlund et al. Proc.Natl.Acad.Sci.USA 113 326 2016
source	UNIDENTIFIED
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	5cbz_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5cbz_E interface=27,28,32, ppskvclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrlrkclqagmnlgar > 5cbz_F interface=26,27,31, pskvclvcgdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacrlrkclqagmnlg
interface signature	KVR/KVR

Estimated binding specificities ?

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# IC=7.953 IC/col=0.612 n_of_columns=13

specificity:

A |   0  24  57   0  96  24  24  24   0   0   9  24  19
C |   0  24  11  96   0  24  24  24   0   0  28  24  76
G |  96  24   9   0   0  24  24  24   0  96  11  24   0
T |   0  24  19   0   0  24  24  24  96   0  48  24   1

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updated Tue Sep 10 02:55:50 2024