5cky_O : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MTERF1 R162A SUBSTITUTION BOUND TO THE TERMINATION SEQUENCE. (Transcription termination factor 1, mitochondrial)
reference	Garcia-Diaz et al.
source	Homo sapiens
experiment	X-ray (resolution=2.62, R-factor=0.216)
sequence family	mTERF;
reference complex	3mva_O
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5cky_O interface=56,58,87,90,93,97,123,126,127,130,170,171,179,208,212,213,216,247,278,281,312,315, edllknlltmgvdidmarkrqpgvfhrmitneqdlkmfllskgaskeviasiisrYpRaitrtpenlskrwdlwrkivtsdleivnIleAspEsffRsnnnlnlennikflysvgltrkclcRllTNapRtfsnsldlnkqmveflqaaglslghndpadfvrkiifknPFiliqstkRvkanieflrstfnlnseellvlicgpgaEildLSndYarrsyanikeklfslgcteeevqkfvlsypDviflaekkfndkidclmeenisisqiienpRvlDssistlksrikelvnagcnlstlnitllswSkkRyeaklkkls
interface signature	YRIAERRTNRPFRELSYDRDSR

Estimated binding specificities ?

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# IC=14.667 IC/col=0.978 n_of_columns=15

specificity:

A |  67   0   0   0   0  96   0  96  24  24   9   0   0   0   9
C |   9   0   0   0  96   0   0   0  24  24  67  96   0   0   9
G |  11   0  96  96   0   0  96   0  24  24   9   0  96  96   9
T |   9  96   0   0   0   0   0   0  24  24  11   0   0   0  69

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updated Thu Sep 12 20:57:45 2024