5d39_AC : 3D-footprint complex

structure name	TRANSCRIPTION FACTOR-DNA COMPLEX
reference	Ouyang et al. Proc.Natl.Acad.Sci.USA 113 13015 2016
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	p53-like transcription factors;SH2 domain;STAT;
reference complex	4y5w_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d39_A interface=134,252,253,255,256, qeelkfktglrrlqhrvgeihllrealalamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrflpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcerkgtesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve > 5d39_C interface=135,249,250,252,253, qeelkfktglrrlqhrvgeihllrealealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrfpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcetesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirggspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve
interface signature	KVHNQ/KVHNQ

Estimated binding specificities ?

readout + contact

# IC=8.004 IC/col=0.889 n_of_columns=9

specificity:

A |   0   0   0   9  24   9   0  69  96
C |   0   0  96  67  24  11   0   9   0
G |   0   0   0  11  24  67  96   9   0
T |  96  96   0   9  24   9   0   9   0

scan!

home
updated Thu Jun 25 02:59:10 2026