5d39_BD : 3D-footprint complex

structure name	TRANSCRIPTION FACTOR-DNA COMPLEX
reference	Ouyang et al. Proc.Natl.Acad.Sci.USA 113 13015 2016
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	p53-like transcription factors;SH2 domain;STAT;
reference complex	4y5w_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d39_B interface=132,247,248,250,251, qeelkfktglrrlqhrvgeihllrealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrfpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcegtesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve > 5d39_D interface=136,250,251,253,254, qeelkfktglrrlqhrvgeihllrealqealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrfpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcetesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve
interface signature	KVHNQ/KVHNQ

Estimated binding specificities ?

readout + contact

# IC=9.805 IC/col=1.089 n_of_columns=9

specificity:

A |   0   0   0   0  54   0  13  96  96
C |   0   0  96  96  13   0  13   0   0
G |   0   0   0   0  16  96  57   0   0
T |  96  96   0   0  13   0  13   0   0

scan!

home
updated Mon Jan 5 15:30:22 2026