5d39_BD : 3D-footprint complex

structure name	TRANSCRIPTION FACTOR-DNA COMPLEX
reference	Ouyang et al. Proc.Natl.Acad.Sci.USA 113 13015 2016
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d39_B interface=132,247,248,250,251, qeelkfktglrrlqhrvgeihllrealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrfpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcegtesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve > 5d39_D interface=136,250,251,253,254, qeelkfktglrrlqhrvgeihllrealqealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrfpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcetesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve
interface signature	KVHNQ/KVHNQ

Estimated binding specificities ?

readout + contact

# IC=9.764 IC/col=1.085 n_of_columns=9

specificity:

A |   0   0   0   0  54   0  16  96  96
C |   0   0  96  96  16   0  13   0   0
G |   0   0   0   0  13  96  54   0   0
T |  96  96   0   0  13   0  13   0   0

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updated Sat Dec 14 01:14:49 2024