5d4r_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORE1
reference	Narayanan et al. J.Biol.Chem. 291 1235 2016
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=2.07, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4h0e_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d4r_A interface=44,54,55,56,59,75, hlevlfqgplgsefmlpkyaqvkeeisswinqgkilpdqkiptEnelmqqfgvSRHtiRkaigdlvsqgllysvQgggtfva > 5d4r_B interface=33,43,44,45,48,64, sefmlpkyaqvkeeisswinqgkilpdqkiptEnelmqqfgvSRHtiRkaigdlvsqgllysvQgggtfva
interface signature	ESRHRQ/ESRHRQ

Estimated binding specificities ?

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# IC=8.930 IC/col=0.812 n_of_columns=11

specificity:

A |  11  37   0   6  80   0   0  24  46   0  96
C |  15   0   0  21   7  96   0  24   6  96   0
G |   9  58  96   9   6   0  96  24  27   0   0
T |  61   1   0  60   3   0   0  24  17   0   0

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updated Wed Jul 30 06:52:26 2025