5d4s_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORX1
reference	Narayanan et al. J.Biol.Chem. 291 1235 2016
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=1.97, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4h0e_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d4s_A interface=32,42,44,47,63, efmlpkyaqvkeeisswinqgkilpdqkiptEnelmqqfgvSrHtiRkaigdlvsqgllysvQgggtfva > 5d4s_B interface=45,46,55,56,57,60,76, hhhlevlfqgplsefmlpkyaqvkeeisswinqgkilpdqkiptENelmqqfgvSRHtiRkaigdlvsqgllysvQgggtfva
interface signature	ESHRQ/ENSRHRQ

Estimated binding specificities ?

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# IC=7.950 IC/col=0.795 n_of_columns=10

specificity:

A |   1   0   2  24   0   0   2  48  16   2
C |  18   0  26  24  96   0   2  16  22   2
G |   0  96   2  24   0  96   3  13   2  89
T |  77   0  66  24   0   0  89  19  56   3

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updated Thu Jun 25 03:10:43 2026