5d4s_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORX1
reference	Narayanan et al. J.Biol.Chem. 291 1235 2016
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=1.97, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4h0e_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d4s_A interface=32,42,44,47,63, efmlpkyaqvkeeisswinqgkilpdqkiptEnelmqqfgvSrHtiRkaigdlvsqgllysvQgggtfva > 5d4s_B interface=45,46,55,56,57,60,76, hhhlevlfqgplsefmlpkyaqvkeeisswinqgkilpdqkiptENelmqqfgvSRHtiRkaigdlvsqgllysvQgggtfva
interface signature	ESHRQ/ENSRHRQ

Estimated binding specificities ?

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# IC=7.939 IC/col=0.794 n_of_columns=10

specificity:

A |   4  57  15  90   0   0  24  61   0  76
C |  90  17  21   1  96   0  24   4  96   1
G |   1  21  19   1   0  96  24  30   0  19
T |   1   1  41   4   0   0  24   1   0   0

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updated Tue Sep 10 03:22:37 2024