5d8c_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HINMLR, A MERR FAMILY REGULATOR LACKING THE SENSOR DOMAIN, BOUND TO PROMOTER DNA
reference	Counago et al. 'Nucleic 44 6981 2016
source	Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
experiment	X-ray (resolution=2.25, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d8c_A interface=17,20,21,24, mtyttakaaekigisaYtlRFydKegllpnvgrdeygnrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav > 5d8c_B interface=19,22,23,26,40, namtyttakaaekigisaYtlRFydKegllpnvgrdeygNrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav
interface signature	YRFK/YRFKN

Estimated binding specificities ?

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# IC=7.567 IC/col=0.631 n_of_columns=12

specificity:

A |  89   0  96   9  24  24  24  24   9   0  13   0
C |   0   6   0   6  24  24  24  24  68   0  71   0
G |   6  84   0  75  24  24  24  24  13   0   6   0
T |   1   6   0   6  24  24  24  24   6  96   6  96

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updated Sat Dec 14 01:26:49 2024