5d8c_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HINMLR, A MERR FAMILY REGULATOR LACKING THE SENSOR DOMAIN, BOUND TO PROMOTER DNA
reference	Counago et al. 'Nucleic 44 6981 2016
source	Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	5d8c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d8c_A interface=17,20,21,24, mtyttakaaekigisaYtlRFydKegllpnvgrdeygnrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav > 5d8c_B interface=19,22,23,26,40, namtyttakaaekigisaYtlRFydKegllpnvgrdeygNrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav
interface signature	YRFK/YRFKN

Estimated binding specificities ?

readout + contact

# IC=7.770 IC/col=0.648 n_of_columns=12

specificity:

A |  90   6  96   6  24  24  24  24   6   0   6   0
C |   0   6   0   6  24  24  24  24  78   0  75   0
G |   6  78   0  78  24  24  24  24   6   0   6   0
T |   0   6   0   6  24  24  24  24   6  96   9  96

scan!

home
updated Tue Sep 10 03:23:07 2024