5ds9_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F1-8A (AAATTAGTTTGAATTTTGAGCTAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli (strain K12) / Escherichia coli (strain K12) / Escherichia coli (strain K12) / Escherichia coli (strain K12)
experiment	X-ray (resolution=2.56, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ds9_A interface=77,78,80,82,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRKklkkygmn > 5ds9_B interface=84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlRkklkkygmn
interface signature	NRTRK/NRR

Estimated binding specificities ?

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# IC=9.681 IC/col=0.569 n_of_columns=17

specificity:

A |  82   0   6  24   4  96  24  24  24  24  24   6  82  24  84   0   6
C |   4   0  82  24  84   0  24  24  24  24  24  82   4  24   4  96   4
G |   4  96   4  24   4   0  24  24  24  24  24   4   4  24   4   0   4
T |   6   0   4  24   4   0  24  24  24  24  24   4   6  24   4   0  82

scan!

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updated Tue Sep 10 03:34:11 2024