5dtd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F1-8C (AAATTCGTTTGAATTTTGAGCGAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dtd_A interface=77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRkklkkygmn > 5dtd_B interface=84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlRkklkkygmn
interface signature	NRTR/NRR

Estimated binding specificities ?

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# IC=8.177 IC/col=0.481 n_of_columns=17

specificity:

A |   3   0   6  24  24   7  24  24  24  24  24   0   3  24   7   0   3
C |  88   0  11  24  24   7  24  24  24  24  24   3  84  24  13  96   3
G |   2  96   3  24  24  75  24  24  24  24  24   0   9  24  57   0  84
T |   3   0  76  24  24   7  24  24  24  24  24  93   0  24  19   0   6

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updated Wed Jul 30 07:04:56 2025