5dtd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F1-8C (AAATTCGTTTGAATTTTGAGCGAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dtd_A interface=77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRkklkkygmn > 5dtd_B interface=84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlRkklkkygmn
interface signature	NRTR/NRR

Estimated binding specificities ?

contact

# IC=8.250 IC/col=0.485 n_of_columns=17

specificity:

A |   4   0   0  24  24   8  24  24  24  24  24   4   4  24   6   0   0
C |  87   0   4  24  24   8  24  24  24  24  24   4  79  24  20  96   4
G |   4  96   5  24  24  72  24  24  24  24  24   5   9  24  62   0  92
T |   1   0  87  24  24   8  24  24  24  24  24  83   4  24   8   0   0

scan!

home
updated Tue Sep 10 03:34:22 2024