5dy0_AB : 3D-footprint complex

structure name	CRYSTAL OF AMTR FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH DNA
reference	Palanca et al. 'Febs 283 1039 2016
source	Corynebacterium glutamicum
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6gy3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dy0_A interface=3,5,40,41,50,51,52,53,55,56, gaVgRprrsaprragknpreeildasaelfthqgfattsTHqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak > 5dy0_B interface=49,50,51,54,55, avgrprrsaprragknpreeildasaelfthqgfattsthqiadavgiRQAslYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqada
interface signature	VRTHRQASYY/RQAYY

Estimated binding specificities ?

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# IC=13.508 IC/col=0.750 n_of_columns=18

specificity:

A |   3  96   0   3   3  89   0  85  24  24  24  24   3  96   3  85  24  82
C |   5   0   0  87   3   4   0   3  24  24  24  24   3   0   3   3  24   3
G |   3   0   0   3   3   3   0   5  24  24  24  24   5   0   5   5  24   5
T |  85   0  96   3  87   0  96   3  24  24  24  24  85   0  85   3  24   6

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updated Sat Dec 16 00:46:45 2023