5dy0_AB : 3D-footprint complex

structure name	CRYSTAL OF AMTR FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH DNA
reference	Palanca et al. 'Febs 283 1039 2016
source	Corynebacterium glutamicum
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6gy3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dy0_A interface=3,5,40,41,50,51,52,53,55,56, gaVgRprrsaprragknpreeildasaelfthqgfattsTHqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak > 5dy0_B interface=49,50,51,54,55, avgrprrsaprragknpreeildasaelfthqgfattsthqiadavgiRQAslYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqada
interface signature	VRTHRQASYY/RQAYY

Estimated binding specificities ?

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# IC=13.727 IC/col=0.763 n_of_columns=18

specificity:

A |  15  24   3  96   0  87  24  24  24  24   0  96   0  92   0  96   0  49
C |  12  24   3   0   0   3  24  24  24  24   0   0   3   3   3   0   0  17
G |  20  24   3   0   0   3  24  24  24  24   0   0   1   0  93   0   0  18
T |  49  24  87   0  96   3  24  24  24  24  96   0  92   1   0   0  96  12

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updated Tue Sep 10 03:35:08 2024