5dy0_AB : 3D-footprint complex

structure name	CRYSTAL OF AMTR FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH DNA
reference	Palanca et al. 'Febs 283 1039 2016
source	Corynebacterium glutamicum
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6gy3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dy0_A interface=3,5,40,41,50,51,52,53,55,56, gaVgRprrsaprragknpreeildasaelfthqgfattsTHqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak > 5dy0_B interface=49,50,51,54,55, avgrprrsaprragknpreeildasaelfthqgfattsthqiadavgiRQAslYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqada
interface signature	VRTHRQASYY/RQAYY

Estimated binding specificities ?

contact

# IC=13.602 IC/col=0.756 n_of_columns=18

specificity:

A |   3  96   0   3   3  87   0  85  24  24  24  24   3  96   0  85  24  84
C |   3   0   0  85   5   3   0   3  24  24  24  24   3   0   3   3  24   3
G |   3   0   0   5   3   3   0   3  24  24  24  24   5   0   3   5  24   3
T |  87   0  96   3  85   3  96   5  24  24  24  24  85   0  90   3  24   6

scan!

home
updated Wed Jul 30 07:05:49 2025