5dy0_AB : 3D-footprint complex

structure name	CRYSTAL OF AMTR FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH DNA
reference	Palanca et al. 'Febs 283 1039 2016
source	Corynebacterium glutamicum
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dy0_A interface=3,5,40,41,50,51,52,53,55,56, gaVgRprrsaprragknpreeildasaelfthqgfattsTHqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak > 5dy0_B interface=49,50,51,54,55, avgrprrsaprragknpreeildasaelfthqgfattsthqiadavgiRQAslYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqada
interface signature	VRTHRQASYY/RQAYY

Estimated binding specificities ?

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# IC=13.430 IC/col=0.746 n_of_columns=18

specificity:

A |  15  24   3  89   0  86  24  24  24  24   3  96   4  93   0  96   0  66
C |   9  24   3   3   0   3  24  24  24  24   3   0   3   3   0   0   0   9
G |   6  24   4   3   0   3  24  24  24  24   4   0   3   0  96   0   0   6
T |  66  24  86   1  96   4  24  24  24  24  86   0  86   0   0   0  96  15

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updated Sat Dec 14 01:39:47 2024