6gy3_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF C. GLUTAMICUM AMTR BOUND TO GLNA OPERATOR DNA (AmtR protein)
reference	Muller et al. 'To ? ? ?
source	Corynebacterium glutamicum
experiment	X-ray (resolution=2.68, R-factor=0.210)
structural superfamily	Homeodomain-like;
sequence family	Bacterial regulatory proteins, tetR family;
multimeric complexes	5dy0_AB 5dy0_CD 6gy3_AB
redundant complexes	5dy0_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6gy3_A interface=24,34,35,36,37,39,40, npreeildasaelftrqgfattsThqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlstldagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnvfrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaplpadrvektlelikqad
interface signature	TRQASYY

Estimated binding specificities ?

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# IC=5.583 IC/col=0.798 n_of_columns=7

specificity:

A |   3   3  11   3  84   0  11
C |   3   3  67   6   3   0  63
G |  84   6  11   3   3   0   7
T |   6  84   7  84   6  96  15

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Dendrogram of similar interfaces ?

matrix format

  
  TA--AT----LCFGHA           +-----------------------------4i6z_B    
                           +-1 
  ----TTRG----YTWA   L   +-2 +-----------------------------7jnp_A    
                         ! ! 
  LC--RTPTPTSTYT--   L --3 +-----------------------------6nsn_B    
                         ! 
  MTRGAAVT--TTYT--   L   +-----------------------------5fmp_B

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updated Fri Sep 13 21:49:46 2024