6gy3_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF C. GLUTAMICUM AMTR BOUND TO GLNA OPERATOR DNA (AmtR protein)
reference	Muller et al. 'To ? ? ?
source	Corynebacterium glutamicum
experiment	X-ray (resolution=2.68, R-factor=0.210)
structural superfamily	Homeodomain-like;
sequence family	Bacterial regulatory proteins, tetR family;
multimeric complexes	5dy0_AB 5dy0_CD 6gy3_AB
redundant complexes	5dy0_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6gy3_A interface=24,34,35,36,37,39,40, npreeildasaelftrqgfattsThqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlstldagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnvfrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaplpadrvektlelikqad
interface signature	TRQASYY

Estimated binding specificities ?

contact

# IC=5.868 IC/col=0.838 n_of_columns=7

specificity:

A |   5  96   6  90  20  55   0
C |   5   0   0   1  16   6  96
G |  80   0   5   5  50  20   0
T |   6   0  85   0  10  15   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  TA--AT----LCFGHA           +-----------------------------4i6z_B    
                           +-1 
  ----TTRG----YTWA   L   +-2 +-----------------------------7jnp_A    
                         ! ! 
  LC--RTPTPTSTYT--   L --3 +-----------------------------6nsn_B    
                         ! 
  MTRGAAVT--TTYT--   L   +-----------------------------5fmp_B

home
updated Sun Aug 3 11:27:29 2025