5dy0_CD : 3D-footprint complex

structure name	CRYSTAL OF AMTR FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH DNA
reference	Palanca et al. 'Febs 283 1039 2016
source	Corynebacterium glutamicum
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6gy3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dy0_C interface=3,48,49,50,51,53,54, vgRprrsaprragknpreeildasaelfthqgfattsthqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak > 5dy0_D interface=2,4,39,40,49,50,51,52,54,55, aVgRprrsaprragknpreeildasaelfthqgfattsTHqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak
interface signature	RRQASYY/VRTHRQASYY

Estimated binding specificities ?

contact

# IC=11.979 IC/col=0.666 n_of_columns=18

specificity:

A |  96   0  24  15  90   0  63  24  24  24  24   1  96   1  63  24  96   0
C |   0   0  24  17   4   0   9  24  24  24  24   1   0  12  11  24   0   0
G |   0   0  24  18   1   0  17  24  24  24  24   1   0   1  11  24   0   0
T |   0  96  24  46   1  96   7  24  24  24  24  93   0  82  11  24   0  96

scan!

home
updated Mon Jan 5 15:58:51 2026