5dy0_CD : 3D-footprint complex

structure name	CRYSTAL OF AMTR FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH DNA
reference	Palanca et al. 'Febs 283 1039 2016
source	Corynebacterium glutamicum
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6gy3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dy0_C interface=3,48,49,50,51,53,54, vgRprrsaprragknpreeildasaelfthqgfattsthqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak > 5dy0_D interface=2,4,39,40,49,50,51,52,54,55, aVgRprrsaprragknpreeildasaelfthqgfattsTHqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak
interface signature	RRQASYY/VRTHRQASYY

Estimated binding specificities ?

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# IC=11.594 IC/col=0.644 n_of_columns=18

specificity:

A |  96   0  24  15  78   0  87  24  24  24  24   9  96   6  71  24  96   0
C |   0   1  24  13   6   0   3  24  24  24  24   6   0   6   6  24   0   0
G |   0   3  24   9   6   0   3  24  24  24  24   9   0   3   6  24   0   0
T |   0  92  24  59   6  96   3  24  24  24  24  72   0  81  13  24   0  96

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updated Tue Sep 10 03:35:24 2024