5dy0_CD : 3D-footprint complex

structure name	CRYSTAL OF AMTR FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH DNA
reference	Palanca et al. 'Febs 283 1039 2016
source	Corynebacterium glutamicum
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dy0_C interface=3,48,49,50,51,53,54, vgRprrsaprragknpreeildasaelfthqgfattsthqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak > 5dy0_D interface=2,4,39,40,49,50,51,52,54,55, aVgRprrsaprragknpreeildasaelfthqgfattsTHqiadavgiRQASlYYhfpskteifltllkstvepstvlaedlsildagpemrlwaivasevrlllstkwnvgrlyqlpivgseefaeyhsqrealtnifrdlateivgddpraelpfhitmsviemrrndgkipsplsadslpetaimladaslavlgaslpadrvektlelikqadak
interface signature	RRQASYY/VRTHRQASYY

Estimated binding specificities ?

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# IC=11.811 IC/col=0.656 n_of_columns=18

specificity:

A |  96   0  24  12  96   0  65  24  24  24  24   0  96  14  60  24  93   0
C |   0   0  24  17   0   0  12  24  24  24  24   0   0  10  11  24   3   0
G |   0   0  24  15   0   0  17  24  24  24  24   0   0  12  15  24   0   0
T |   0  96  24  52   0  96   2  24  24  24  24  96   0  60  10  24   0  96

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updated Sat Dec 14 01:40:11 2024