5e01_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HINMLR, A MERR FAMILY REGULATOR LACKING THE SENSOR DOMAIN, BOUND TO PALYNDROMIC PROMOTER DNA
reference	Counago et al. 'Nucleic 44 6981 2016
source	Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	5d8c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e01_A interface=17,20,21,24, mtyttakaaekigisaYtlRFydKegllpnvgrdeygnrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav > 5e01_B interface=18,21,22,25, amtyttakaaekigisaYtlRFydKegllpnvgrdeygnrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav
interface signature	YRFK/YRFK

Estimated binding specificities ?

readout + contact

# IC=7.183 IC/col=0.599 n_of_columns=12

specificity:

A |  96   4  96   4  24  24  24  24   4   0  14   6
C |   0   4   0  16  24  24  24  24  76   0  74   0
G |   0  64   0  67  24  24  24  24   9   0   4   4
T |   0  24   0   9  24  24  24  24   7  96   4  86

scan!

home
updated Mon Jan 5 15:59:11 2026