5e01_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HINMLR, A MERR FAMILY REGULATOR LACKING THE SENSOR DOMAIN, BOUND TO PALYNDROMIC PROMOTER DNA
reference	Counago et al. 'Nucleic 44 6981 2016
source	Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) / Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	5d8c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e01_A interface=17,20,21,24, mtyttakaaekigisaYtlRFydKegllpnvgrdeygnrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav > 5e01_B interface=18,21,22,25, amtyttakaaekigisaYtlRFydKegllpnvgrdeygnrrftdkdlqwlsllqclkntgmslkdikrfaectiigddtieerlslfenqtknvkcqiaelkryldlleyklafyqkakalgsvkav
interface signature	YRFK/YRFK

Estimated binding specificities ?

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# IC=7.358 IC/col=0.613 n_of_columns=12

specificity:

A |  96   9  96  14  24  24  24  24   7   0  14   0
C |   0   7   0   9  24  24  24  24  68   0  75   0
G |   0  73   0  59  24  24  24  24   7   0   0   0
T |   0   7   0  14  24  24  24  24  14  96   7  96

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updated Tue Sep 10 03:35:41 2024