5e3l_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F1-8G (AAATTGGTTTGAATTTTGAGCCAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.66, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e3l_A interface=77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRkklkkygmn > 5e3l_B interface=84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlRkklkkygmn
interface signature	NRTR/NRR

Estimated binding specificities ?

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# IC=9.846 IC/col=0.579 n_of_columns=17

specificity:

A |   4   0  13  24   4  96  24  24  24  24  24   4  91  24  82   0   4
C |   4   0  75  24  82   0  24  24  24  24  24  84   0  24   4  96  82
G |  82  96   0  24   4   0  24  24  24  24  24   4   4  24   6   0   6
T |   6   0   8  24   6   0  24  24  24  24  24   4   1  24   4   0   4

scan!

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updated Wed Jul 30 07:10:13 2025