5e3l_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F1-8G (AAATTGGTTTGAATTTTGAGCCAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.66, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e3l_A interface=77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRkklkkygmn > 5e3l_B interface=84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlRkklkkygmn
interface signature	NRTR/NRR

Estimated binding specificities ?

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# IC=9.818 IC/col=0.578 n_of_columns=17

specificity:

A |   3   0   0  24  10   3  24  24  24  24  24   0   3  24  19   0   3
C |   0   0   3  24  17   3  24  24  24  24  24   0   5  24   3  96  88
G |  93  96   1  24  14  87  24  24  24  24  24   0  85  24  60   0   5
T |   0   0  92  24  55   3  24  24  24  24  24  96   3  24  14   0   0

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updated Thu Jun 25 03:29:37 2026