5e3l_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F1-8G (AAATTGGTTTGAATTTTGAGCCAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.66, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e3l_A interface=77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRkklkkygmn > 5e3l_B interface=84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlRkklkkygmn
interface signature	NRTR/NRR

Estimated binding specificities ?

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# IC=9.612 IC/col=0.565 n_of_columns=17

specificity:

A |   4   0   4  24  10   0  24  24  24  24  24   0   0  24  12   0   4
C |   4   0   4  24  12   4  24  24  24  24  24   0   4  24  10  96  83
G |  83  96   4  24   4  88  24  24  24  24  24   0  92  24  66   0   5
T |   5   0  84  24  70   4  24  24  24  24  24  96   0  24   8   0   4

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updated Tue Sep 10 03:39:04 2024