5e3m_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F35 (AAATTAGTTTGAATCTCGAGCTAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.89, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e3m_A interface=77,78,83, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlrKklkkygmn > 5e3m_B interface=84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgtlRkklkkygmn
interface signature	NRK/NRR

Estimated binding specificities ?

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# IC=9.559 IC/col=0.562 n_of_columns=17

specificity:

A |  87   0   9  24   6   3  24  24  24  24  24   6  84  24  84   0   3
C |   3   0  81  24  84   3  24  24  24  24  24  84   3  24   3  96   6
G |   3  96   3  24   3  84  24  24  24  24  24   3   6  24   3   0   3
T |   3   0   3  24   3   6  24  24  24  24  24   3   3  24   6   0  84

scan!

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updated Wed Jul 30 07:10:25 2025