5e3n_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F31 (AAATTTGTAGGAATTTTCTGCAAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.66, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e3n_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 5e3n_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

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# IC=9.947 IC/col=0.585 n_of_columns=17

specificity:

A |   0   0   0  24   6   6  24  24  24  24  24   6   6  24   6   0  96
C |   0   0   0  24  12   6  24  24  24  24  24   6  78  24   6  96   0
G |   0  96   0  24  72  78  24  24  24  24  24   6   6  24  78   0   0
T |  96   0  96  24   6   6  24  24  24  24  24  78   6  24   6   0   0

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updated Thu Jun 25 03:30:08 2026