5e3o_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F32 (AAATTTGGAGGAATTTTCTCCAAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.78, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e3o_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 5e3o_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

contact

# IC=9.748 IC/col=0.573 n_of_columns=17

specificity:

A |   0   0   3  24   9  86  24  24  24  24  24   4  13  24   3   0  96
C |   0   0   3  24  16   4  24  24  24  24  24  86  64  24  87  96   0
G |   0  96  87  24  56   3  24  24  24  24  24   3   3  24   3   0   0
T |  96   0   3  24  15   3  24  24  24  24  24   3  16  24   3   0   0

scan!

home
updated Wed Jul 30 07:10:52 2025