5e3o_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F32 (AAATTTGGAGGAATTTTCTCCAAATTT)
reference	Hancock et al. 'Plos 11 e0150189 2016
source	Escherichia coli
experiment	X-ray (resolution=2.78, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e3o_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 5e3o_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

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# IC=9.693 IC/col=0.570 n_of_columns=17

specificity:

A |   0   0   3  24  18  86  24  24  24  24  24   4  13  24   4   0  96
C |   0   0   3  24  13   3  24  24  24  24  24  86  56  24  86  96   0
G |   0  96  87  24  62   4  24  24  24  24  24   3   9  24   3   0   0
T |  96   0   3  24   3   3  24  24  24  24  24   3  18  24   3   0   0

scan!

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updated Tue Sep 10 03:39:47 2024