5e5o_A : 3D-footprint complex

structure name	I-SMAMI BOUND TO UNCLEAVED DNA TARGET IN THE PRESENCE OF CALCIUM IONS (I-SmaMI LAGLIDADG endonuclease)
reference	J.Mol.Biol. 428 206 2016 X-RAY DIFFRACTION
source	Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) / Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
experiment	X-ray (resolution=2.36, R-factor=0.192)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e5o_A interface=16,18,20,22,26,27,32,34,38,40,63,65,71,73,75,177,179,181,183,185,186,191,197,199,221,223,225,228,230,234, klnpwavvgfidaegSfMvRvRknsKYktgwLvVaifSvTvdkkdlflleslktffgglgsiKkSgnstfSyRiEsseqltkiilpffdkysliteklgdyllfkkvlelmgtkehltqrglekivslkasinkglseelqaafpqcvptprpeinnknipdpfwlagfvsgdgsfKsIlKkSeSIkvgfQsilvfQiTqhardvklmeslisylgcgfiEkDsRgpWlYytvTnfsdiqgkiipffhqykiigskygdymdwckialimqnknhltpeglneiralkggmnkg
interface signature	SMRRKYLVSTKSSREKIKSSIQQTEDRWYT

Estimated binding specificities ?

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# IC=21.582 IC/col=0.981 n_of_columns=22

specificity:

A |   9   4  96   0  96   6   0   9   0  82   4  24  24  24   0   0  96   0   0  96   0  96
C |  13   6   0  96   0  82  96   1   0   6   9  24  24  24   0   0   0   0   0   0   0   0
G |  65   4   0   0   0   4   0   0  96   4  15  24  24  24  96  96   0  96  96   0   0   0
T |   9  82   0   0   0   4   0  86   0   4  68  24  24  24   0   0   0   0   0   0  96   0

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updated Tue Dec 17 01:34:47 2024