5e5o_A : 3D-footprint complex

structure name	I-SMAMI BOUND TO UNCLEAVED DNA TARGET IN THE PRESENCE OF CALCIUM IONS (I-SmaMI LAGLIDADG endonuclease)
reference	J.Mol.Biol. 428 206 2016 X-RAY DIFFRACTION
source	Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) / Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
experiment	X-ray (resolution=2.36, R-factor=0.192)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
reference complex	5e67_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5e5o_A interface=16,18,20,22,26,27,32,34,38,40,63,65,71,73,75,177,179,181,183,185,186,191,197,199,221,223,225,228,230,234, klnpwavvgfidaegSfMvRvRknsKYktgwLvVaifSvTvdkkdlflleslktffgglgsiKkSgnstfSyRiEsseqltkiilpffdkysliteklgdyllfkkvlelmgtkehltqrglekivslkasinkglseelqaafpqcvptprpeinnknipdpfwlagfvsgdgsfKsIlKkSeSIkvgfQsilvfQiTqhardvklmeslisylgcgfiEkDsRgpWlYytvTnfsdiqgkiipffhqykiigskygdymdwckialimqnknhltpeglneiralkggmnkg
interface signature	SMRRKYLVSTKSSREKIKSSIQQTEDRWYT

Estimated binding specificities ?

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# IC=21.964 IC/col=0.998 n_of_columns=22

specificity:

A |   0  96   0   0   0   0   0   0  24  24  24  80   5   0  84   0   5   0   0   0  84   5
C |   0   0   0  96  96   0  96  96  24  24  24   0   5  96   0   0   5   0   0   0   7  73
G |   0   0   0   0   0   0   0   0  24  24  24   5   7   0   1  96  79   0  96   0   5   7
T |  96   0  96   0   0  96   0   0  24  24  24  11  79   0  11   0   7  96   0  96   0  11

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updated Thu Sep 12 21:11:43 2024