5ed4_EF : 3D-footprint complex

structure name	STRUCTURE OF A PHOP-DNA COMPLEX
reference	'Sci 6 24442 2016
source	Mycobacterium tuberculosis
experiment	X-ray (resolution=2.40, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ed4_E interface=189,190,192,193,194,196,197,200,214, tpearvlvvddeanivellsvslkfqgfevytatngaqaldraretrpdavildvmmpgmdgfgvlrrlradgidapalfltardslqdkiagltlggddyvtkpfsleevvarlrvilrragrnvrltfadieldeethevwkagqpvslspteftllryfvinagtvlskpkildhvwrydfggdvNVvESYvSYlrRkidtgekrllhtlRgvgyvlrepr > 5ed4_F interface=179,182,183,184,186,187,190,204, pearvlvvddeanivellsvslkfqgfevytatngaqaldraretrpdavildvmmpgmdgfgvlrrlradgidapalfltaragltlggddyvtkpfsleevvarlrvilrragvrltfadieldeethevwkagqpvslspteftllryfvinagtvlskpkildhvwrydfggdvNvvESYvSYlrRkidtgekrllhtlRgvgyvlrepr
interface signature	NVESYSYRR/NESYSYRR

Estimated binding specificities ?

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# IC=10.352 IC/col=0.609 n_of_columns=17

specificity:

A |  13   0   0   7   4  59  24  24  24  24  24   0   0   0  24   7  71
C |  65   0   0  17   0  11  24  24  24  24  24  92   0   0  24   1   7
G |  11   0  96   7  92  15  24  24  24  24  24   0   0  96  24  88  11
T |   7  96   0  65   0  11  24  24  24  24  24   4  96   0  24   0   7

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updated Sat Dec 14 01:49:56 2024