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legend  pdf

structure nameROK REPRESSOR LMO0178 FROM LISTERIA MONOCYTOGENES BOUND TO OPERATOR
(Lmo0178 protein)
referenceCenter for Structural Genomics of Infectious Diseases (CSGID)
sourceListeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
experimentX-ray (resolution=2.40, R-factor=0.184)
structural superfamilyActin-like ATPase domain;"Winged helix" DNA-binding domain;
sequence familyROK family;
multimeric complexes5f7q_CEJL
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKMSTTYR

Estimated binding specificities ?

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# IC=7.433 IC/col=0.676 n_of_columns=11 specificity:   
A |   0  10  24  24   5   0  80  96  24   5  86
C |   6  66  24  24   5   0   5   0  24   5   5
G |   0   5  24  24   5  96   5   0  24  81   0
T |  90  15  24  24  81   0   6   0  24   5   5
scan!

Dendrogram of similar interfaces ?

matrix format
  
  KC----MGSGTTTTYC--RG   L   +------------------------5f7q_C    
                             ! 
  ----------------YG--       !                     +--4lb5_B    
                           --5            +--------3 
  --SGQGYCNC----------       !            !        ! +-2ve9_C    
                             !            !        +-2 
  ----------------YG--       +------------4          +-4ka4_B    
                                          ! 
  ----------------YG--                    !           +2heo_D    
                                          +-----------1 
  --------RGRGYC------   L                            +1cf7_A    
                           

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updated Mon Jun 29 19:45:19 2026