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legend  pdf

structure nameROK REPRESSOR LMO0178 FROM LISTERIA MONOCYTOGENES BOUND TO OPERATOR
(Lmo0178 protein)
referenceCenter for Structural Genomics of Infectious Diseases (CSGID)
sourceListeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
experimentX-ray (resolution=2.40, R-factor=0.184)
structural superfamilyActin-like ATPase domain;"Winged helix" DNA-binding domain;
sequence familyROK family;
multimeric complexes5f7q_CEJL
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKMSTTYR

Estimated binding specificities ?

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# IC=7.303 IC/col=0.664 n_of_columns=11 specificity:   
A |   0  18  24   0   1   0  82  24  24  20  84
C |   1  68  24   0   4  96   4  24  24   9   4
G |   4   4  24   0   0   0   6  24  24  54   4
T |  91   6  24  96  91   0   4  24  24  13   4
scan!

Dendrogram of similar interfaces ?

matrix format
  
  KC----MGSGTTTTYC--RG   L   +------------------------5f7q_C    
                             ! 
  ----------------YG--       !                     +--4lb5_B    
                           --5            +--------3 
  --SGQGYCNC----------       !            !        ! +-2ve9_C    
                             !            !        +-2 
  ----------------YG--       +------------4          +-4ka4_B    
                                          ! 
  ----------------YG--                    !           +2heo_D    
                                          +-----------1 
  --------RGRGYC------   L                            +1cf7_A

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updated Fri Sep 13 19:33:56 2024