5f7q_CEJL : 3D-footprint complex

structure name	ROK REPRESSOR LMO0178 FROM LISTERIA MONOCYTOGENES BOUND TO OPERATOR
reference	Center for Structural Genomics of Infectious Diseases (CSGID)
source	Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Actin-like ATPase domain;"Winged helix" DNA-binding domain;
reference complex	5f7q_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5f7q_C interface=7,41,42,43,45,46,69, ilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeeldfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye > 5f7q_E interface=8,42,43,44,46,47,70, dilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeelkeayptselndfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye > 5f7q_J interface=8,42,43,44,46,47,70, dilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeelkeayptselndfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye > 5f7q_L interface=8,42,43,44,46,47,70, dilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeeldfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye
interface signature	KMSTTYR/KMSTTYR/KMSTTYR/KMSTTYR

Estimated binding specificities ?

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# IC=20.280 IC/col=0.882 n_of_columns=23

specificity:

A |   5  24  24   0   0   0   5   0   0   0  90  24   0   0  96  96   6   5  90  96  24  24  80
C |   5  24  24   0   0  96   6   0   0  96   0  24   5   0   0   0   5   6   5   0  24  24   6
G |   6  24  24   0   0   0  80   0   0   0   5  24   1  96   0   0   5   5   1   0  24  24   5
T |  80  24  24  96  96   0   5  96  96   0   1  24  90   0   0   0  80  80   0   0  24  24   5

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updated Sat Dec 16 00:59:36 2023