5f7q_CEJL : 3D-footprint complex

structure name	ROK REPRESSOR LMO0178 FROM LISTERIA MONOCYTOGENES BOUND TO OPERATOR
reference	Center for Structural Genomics of Infectious Diseases (CSGID)
source	Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Actin-like ATPase domain;"Winged helix" DNA-binding domain;
reference complex	5f7q_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5f7q_C interface=7,41,42,43,45,46,69, ilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeeldfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye > 5f7q_E interface=8,42,43,44,46,47,70, dilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeelkeayptselndfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye > 5f7q_J interface=8,42,43,44,46,47,70, dilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeelkeayptselndfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye > 5f7q_L interface=8,42,43,44,46,47,70, dilrkgnKdlikdinrytvlnlirekgeitrteiakkcdfgMSTlTYilddlqqegiilegaetsstggRraklvrfnkdygfvvsvkveeeqllfaltdlnaeiientsipfssekkpeeaieliaknvkkmcgnrdmnhllgvgiaisglvnrkkgtvirstmlgwenvaleamlhahfpdipvyvdknincytlaelwlgegkqsnnfatvsvgaglglsvvinrqiyygaqggagefghttiqpggykchcgqkgclemyasefyfrnrgeeldfhfdkvaksaragdematelmgkmgeylgygirniintfnpekviivgeglhhrdlfltkideiasqnffsgagfeteitttsledpawlqgaallvihqlfqvpiye
interface signature	KMSTTYR/KMSTTYR/KMSTTYR/KMSTTYR

Estimated binding specificities ?

readout + contact

# IC=22.397 IC/col=0.974 n_of_columns=23

specificity:

A |   0  72  24   0   0  96  96   0   0   0  96  24   0   0  96  96   8   0  96  96  24  24  72
C |   8   8  24   0   0   0   0   0   0  96   0  24   0   0   0   0  72   0   0   0  24  24   8
G |   8   8  24   0   0   0   0   0   0   0   0  24   0  96   0   0   8  96   0   0  24  24   8
T |  80   8  24  96  96   0   0  96  96   0   0  24  96   0   0   0   8   0   0   0  24  24   8

scan!

home
updated Tue Sep 10 03:46:56 2024