5fmp_AB : 3D-footprint complex

structure name	KSTR, TRANSCRIPTIONAL REPRESSOR OF CHOLESTEROL DEGRADATION IN MYCOBACTERIUM TUBERCULOSIS, BOUND TO THE DNA OPERATOR
reference	Podust et al. 'To ? ? ?
source	MYCOBACTERIUM TUBERCULOSIS
experiment	X-ray (resolution=2.26, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5fmp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5fmp_A interface=30,31,40,41,43,45, gseaqrerrkrildatmaiaskggyeavqMRavadradvAVgTlYryfpskvhllvsalgrefsridaktdrsavagatpfqrlnfmvgklnramqrnpllteamtrayvfadasaasevdqveklidsmfaramangeptedqyhiarvisdvwlsnllawltrrasatdvskrldlavrlli > 5fmp_B interface=29,30,39,40,42,44, seaqrerrkrildatmaiaskggyeavqMRavadradvAVgTlYryfpskvhllvsalgrefsridaktdrsavagatpfqrlnfmvgklnramqrnpllteamtrayvfadasaasevdqveklidsmfaramangeptedqyhiarvisdvwlsnllawltrrasatdvskrldlavrlli
interface signature	MRAVTY/MRAVTY

Estimated binding specificities ?

contact

# IC=10.956 IC/col=0.783 n_of_columns=14

specificity:

A |  10  24  10  81  96   0   0   0   0   0   1  24  24  64
C |  10  24  16   5   0  96   0   0   0   0   5  24  24  10
G |  10  24  60   5   0   0  96   0  96   0   0  24  24  10
T |  66  24  10   5   0   0   0  96   0  96  90  24  24  12

scan!

home
updated Tue Sep 10 04:01:48 2024