structure name | KSTR, TRANSCRIPTIONAL REPRESSOR OF CHOLESTEROL DEGRADATION IN MYCOBACTERIUM TUBERCULOSIS, BOUND TO THE DNA OPERATOR (HTH-TYPE TRANSCRIPTIONAL REPRESSOR KSTR) |
reference | Podust et al. 'To ? ? ? |
source | MYCOBACTERIUM TUBERCULOSIS |
experiment | X-ray (resolution=2.26, R-factor=0.205) |
structural superfamily | Homeodomain-like; |
sequence family | Bacterial regulatory proteins, tetR family; |
multimeric complexes | 5fmp_AB 5ua1_AB |
redundant complexes | ![]() |
links to other resources | NAKB ![]() |
protein sequence | |
interface signature | MRAVTY |
Estimated binding specificities ?
contact | ![]() |
A | 0 0 0 13 24 24 54 C | 0 0 0 13 24 24 13 G | 0 96 0 13 24 24 13 T | 96 0 96 57 24 24 16scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: KSTR | ||
AACTGGAACGTGTTTCAGTT | PubMed | 5fmp_AB(5.12e-12), 5ua1_AB(3.23e-10) |
TNNAACNNGTTNNA | PubMed | 5fmp_AB(1.50e-05), 5ua1_AB(9.82e-05) |
Dendrogram of similar interfaces ?
matrix formatVT--AGDT--TTYT-- L +5gpc_B +-1 ----TTRG----YT-- L +------2 +7jnp_A ! ! LC--RTPTPTSTYT-- L +------------3 +6nsn_B ! ! MTRGTGPT--ATYTWT L --4 +-------5yej_B ! ----TGKG----YCFA L +--------------------4pxi_B |
home
updated Sun Aug 3 09:10:20 2025