| structure name | KSTR, TRANSCRIPTIONAL REPRESSOR OF CHOLESTEROL DEGRADATION IN MYCOBACTERIUM TUBERCULOSIS, BOUND TO THE DNA OPERATOR (HTH-TYPE TRANSCRIPTIONAL REPRESSOR KSTR) |
| reference | Podust et al. 'To ? ? ? |
| source | MYCOBACTERIUM TUBERCULOSIS |
| experiment | X-ray (resolution=2.26, R-factor=0.205) |
| structural superfamily | Homeodomain-like; |
| sequence family | Bacterial regulatory proteins, tetR family; |
| multimeric complexes | 5fmp_AB 5ua1_AB |
| redundant complexes |  5ua1_A
5ua2_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | MRAVTY |
Estimated binding specificities ?
| contact |  |
A | 17 52 24 78 96 0 96 C | 19 8 24 8 0 96 0 G | 17 19 24 8 0 0 0 T | 43 17 24 2 0 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: KSTR | ||
| AACTGGAACGTGTTTCAGTT | PubMed | 5fmp_AB(5.12e-12), 5ua1_AB(3.23e-10) |
| TNNAACNNGTTNNA | PubMed | 5fmp_AB(1.50e-05), 5ua1_AB(9.82e-05) |
Dendrogram of similar interfaces ?
matrix formatVT--AGDT--TTYT-- L +5gpc_B +-1 ----TTRG----YT-- L +------2 +7jnp_A ! ! LC--RTPTPTSTYT-- L +------------3 +6nsn_B ! ! MTRGTGPT--ATYTWT L --4 +-------5yej_B ! ----TGKG----YCFA L +--------------------4pxi_B |
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updated Fri Sep 13 19:37:05 2024