5gpc_ABCD : 3D-footprint complex

structure name	STRUCTURAL ANALYSIS OF FATTY ACID DEGRADATION REGULATOR FADR FROM BACILLUS HALODURANS
reference	Park et al. 'Nucleic 45 4244 2017
source	Bacillus halodurans
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	5gpc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5gpc_A interface=27,37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_B interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh > 5gpc_C interface=37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqvskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_D interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh
interface signature	VADTYL/VADTYL/ADTYL/VADTYL

Estimated binding specificities ?

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# IC=11.619 IC/col=0.726 n_of_columns=16

specificity:

A |   2   9  89  96   2  24  83   0  24  24   0   2  16  24   0   8
C |   3   2   2   0   2  24   8   0  24  24   0   2  48  24   0   8
G |   2  77   2   0   2  24   3  96  24  24   0   3  18  24   0  10
T |  89   8   3   0  90  24   2   0  24  24  96  89  14  24  96  70

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updated Thu Jun 25 04:10:53 2026