5gpc_ABCD : 3D-footprint complex

structure name	STRUCTURAL ANALYSIS OF FATTY ACID DEGRADATION REGULATOR FADR FROM BACILLUS HALODURANS
reference	Park et al. 'Nucleic 45 4244 2017
source	Bacillus halodurans
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	5gpc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5gpc_A interface=27,37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_B interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh > 5gpc_C interface=37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqvskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_D interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh
interface signature	VADTYL/VADTYL/ADTYL/VADTYL

Estimated binding specificities ?

contact

# IC=13.343 IC/col=0.834 n_of_columns=16

specificity:

A |  87  96  24  16  90  96  24  24   0  17  14  90   0   0   2  96
C |   2   0  24   8   2   0  24  24  96   2  66   0   0   0  81   0
G |   5   0  24  61   2   0  24  24   0   2   8   4   0   0   8   0
T |   2   0  24  11   2   0  24  24   0  75   8   2  96  96   5   0

scan!

home
updated Tue Sep 10 04:14:36 2024