5gpc_ABCD : 3D-footprint complex

structure name	STRUCTURAL ANALYSIS OF FATTY ACID DEGRADATION REGULATOR FADR FROM BACILLUS HALODURANS
reference	Park et al. 'Nucleic 45 4244 2017
source	Bacillus halodurans
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	5gpc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5gpc_A interface=27,37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_B interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh > 5gpc_C interface=37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqvskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_D interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh
interface signature	VADTYL/VADTYL/ADTYL/VADTYL

Estimated binding specificities ?

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# IC=12.137 IC/col=0.759 n_of_columns=16

specificity:

A |   0   2  94  96   2  24  74   0  24  24   0   1  18  24   0  10
C |   0   4   2   0   2  24  10   0  24  24   0   2  43  24   0  12
G |   2  88   0   0   2  24   2  96  24  24   0   0  15  24   0  10
T |  94   2   0   0  90  24  10   0  24  24  96  93  20  24  96  64

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updated Wed Jul 30 07:47:41 2025