5gpc_ABCD : 3D-footprint complex

structure name	STRUCTURAL ANALYSIS OF FATTY ACID DEGRADATION REGULATOR FADR FROM BACILLUS HALODURANS
reference	Park et al. 'Nucleic 45 4244 2017
source	Bacillus halodurans
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	5gpc_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5gpc_A interface=27,37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_B interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh > 5gpc_C interface=37,38,40,42,43, kkgpkydqiidaavqviaehgyhqaqvskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglr > 5gpc_D interface=26,36,37,39,41,42, kgpkydqiidaavqviaehgyhqaqVskiakaagvADgTiYLyfnnkedvlislfqekmgrfvdkirsqmneatdveeklkilvnmhfkqlaadhklaivtqlelrqsntelrlkinevlkgylnlldellmegkekgyffqeldtrlarqmifgtldevvtnwvmkdckydltalvkpvhqlllgglrh
interface signature	VADTYL/VADTYL/ADTYL/VADTYL

Estimated binding specificities ?

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# IC=13.446 IC/col=0.840 n_of_columns=16

specificity:

A |  93  96  24  13  93  96  24  24   0  16  14  90   0   4   1  90
C |   1   0  24   9   1   0  24  24  96   1  60   1   0   1  90   1
G |   1   0  24  63   1   0  24  24   0   1  13   4   0   1   4   4
T |   1   0  24  11   1   0  24  24   0  78   9   1  96  90   1   1

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updated Mon Jan 5 16:46:26 2026