5h58_ABCD : 3D-footprint complex

structure name	STRUCTURAL AND DYNAMICS STUDIES OF THE TETR FAMILY PROTEIN, CPRB FROM STREPTOMYCES COELICOLOR IN COMPLEX WITH ITS BIOLOGICAL OPERATOR SEQUENCE
reference	Sengupta et al. 'J. 198 134 2017
source	STREPTOMYCES COELICOLOR A3(2) / STREPTOMYCES COELICOLOR A3(2) / STREPTOMYCES COELICOLOR A3(2) / STREPTOMYCES COELICOLOR A3(2) / STREPTOMYCES COELICOLOR A3(2) / STREPTOMYCES COELICOLOR A3(2) / STREPTOMYCES COELICOLOR A3(2) / STREPTOMYCES COELICOLOR A3(2)
experiment	X-ray (resolution=3.99, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	4pxi_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5h58_A interface=28,43, lraeqtratiigaaadlfdrrgyesttLseivahagvtkgalYfhfaakedlahaileiqsrtsrrlakdldgrgysslealmrltfgmarlcvqgpvlraglrlatapvrpplphpftewreiatsrlldavrqsdvhqdidvdsvahtlvcsvvgtreprrlaemwyilirgmvpvtrraryvtlaarleqe > 5h58_B interface=28,38,39,43,44, lraeqtratiigaaadlfdrrgyesttLseivahagvTKgalYFhfaakedlahaileiqsrtsrrlakdldgrgysslealmrltfgmarlcvqgpvlraglrlatagvpvrpplphpftewreiatsrlldavrqsdvhqdidvdsvahtlvcsvvgtrtlepagreprrlaemwyilirgmvpvtrraryvtlaarleqet > 5h58_C interface=38,39,43,44, lraeqtratiigaaadlfdrrgyesttlseivahagvTKgalYFhfaakedlahaileiqsrtsrrlakdldgrgysslealmrltfgmarlcvqgpvlraglrlatagvvrpplphpftewreiatsrlldavrqsdvhqdidvdsvahtlvcsvvgtrvvgreprrlaemwyilirgmvpvtrraryvtlaarleqet > 5h58_D interface=25,26,36,40, eqtratiigaaadlfdrrgyesttLSeivahagvtKgalYfhfaakedlahaileiqsrtsrrlakdldysslealmrltfgmarlcvqgpvlraglrlatagvpvrlphpftewreiatsrlldavrqsdvhqdidvdsvahtlvcsvvgtrvagreprrlaemwyilirgmvpvtrraryvtlaarleqet
interface signature	LY/LTKYF/TKYF/LSKY

Estimated binding specificities ?

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# IC=13.249 IC/col=1.019 n_of_columns=13

specificity:

A |  96  96   0  96   0   8   8  13   0   8   4   0   0
C |   0   0  96   0   0  69  69  13   0   8  84  96   0
G |   0   0   0   0  96   8   8  56   0  72   4   0  96
T |   0   0   0   0   0  11  11  14  96   8   4   0   0

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updated Tue Sep 10 04:32:36 2024