5h9e_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF E. COLI CASCADE BOUND TO A PAM-CONTAINING DSDNA TARGET (32-NT SPACER) AT 3.20 ANGSTROM RESOLUTION.
reference	van Erp et al. Nature 530 499 2016
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	X-ray (resolution=3.21, R-factor=?)
reference complex	5h9f_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5h9e_A interface=263,296,297,348,349,379,383,384,387,394,402,403,458,459,467,470, nllidnwipvrprnggkvqiinlqslycsrdqwrlslprddmelaalallvcigqiiapakddvefrhrimnpltedefqqliapwidmfylnhaehpfmqtkgvkandvtpmekllagvsgatncafvnqpgqgealcggctaialfnqanqapgfgggfksglrggtpvttfvrgidlrstvllnvltlprlqkqfptenqptwikpiksnesipassigfvrglfwqpahielcdpigigkcsccgqesnlrytgflkeKftftvnglwphphspclvtvkkgeveekflafTTsapswtqisrvvvdkiiqnegnrvaavvnqfrniapqsplelimggyrnnQAsilerrhdvlmgnvineivtvglgyktalRkalYTfaEgfknkdFkgagvsvHEtaerhfyrqsellipdvlanvnfsqadeviadlrdklhqlcemlfnqsvapyahHPklistlaLarAtlykhlrelkp > 5h9e_C interface=77,80,83,138,141,145,148,149, deidamalyrawqqldngscaqirrvsepdelrdipafyrlvqpfgwenprhqqallrmvfclsagknvirhqdkkTgiSlgRalansgrinerrifqliradrtadmvqlrrllthaepvldwplmarmltwwgkrErqQlleDfvLTt
interface signature	KTTQARYTEFHEHPLA/TSREQDLT

Estimated binding specificities ?

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# IC=13.295 IC/col=0.886 n_of_columns=15

specificity:

A |   9  67  24   0   0  24   0   9  96   0  24   0  96   0   0
C |   9  11  24   0   0  24   0   9   0   0  24   0   0   0   0
G |  67   9  24  96   0  24   0  11   0   0  24   0   0   0   0
T |  11   9  24   0  96  24  96  67   0  96  24  96   0  96  96

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updated Mon Jan 5 17:09:18 2026