5h9e_BDEFGHIJ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF E. COLI CASCADE BOUND TO A PAM-CONTAINING DSDNA TARGET (32-NT SPACER) AT 3.20 ANGSTROM RESOLUTION.
reference	van Erp et al. Nature 530 499 2016
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	X-ray (resolution=3.21, R-factor=?)
reference complex	5h9f_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5h9e_B interface=21,22,25,93,115, deidamalyrawqqldngscAQirRvsepdelrdipafyrlvqpfgwenprhqqallrmvfclsagknvirhqdkgislgralansgrinerRifqliradrtadmvqlrrlltHaepvldwplmarmltwwgkrerqqlledfvlttnkn > 5h9e_D interface=109,165,167,176, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgKvdgamsiahaitthqvdqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgdmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsvkqmptleqlkswvrnng > 5h9e_E interface=109,165,167,198,199,210,212,213, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidWFtavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfsltaqvkqmptleqlkswvrnng > 5h9e_F interface=109,110,165,167,198,199,210,212,213, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAVtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidWFtavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpitaqvkqmptleqlkswvrnnge > 5h9e_G interface=109,165,167,199,201,208,210,212,213, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidwFtAvddlqeQgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsqvkqmptleqlkswvrnnge > 5h9e_H interface=109,167,199,208,210,212,213, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrmaTsgmmtelgkvdgamsiahaitthqvdsdidwFtavddlqeQgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsvkqmptleqlkswvrnng > 5h9e_I interface=189,199,201,203,204,206, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgsadavtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrmatsgmmtelgkvdgamsiahaitthqvdsdidWftavddlqeQgSaHLgTqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpitaqvkqmptleqlkswvrnng > 5h9e_J interface=85,103,105, mrsylilrlagpmqawgqptfegtrptgrfptrsgllgllgaclgiqrddtsslqalsesvqfavrcdelilddrrvsvtglrdYhtvlgaredyrglksheTiQtwreylcdasftvalwltphatmviselekavlkprytpylgrrscplthplflgtcqasdpqkallnyepvggdiyseesvtghhlkftardepmitlprqfasrewyvikgg
interface signature	AQRRH/AMTK/AMTWFSHL/AVMTWFSHL/AMTFAQSHL/ATFQSHL/WQSHLT/YTQ

Estimated binding specificities ?

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# IC=36.455 IC/col=1.176 n_of_columns=31

specificity:

A |   0   0   0   0   0  24   0  96  96   0   0   0  96   0   0  96   0   0   0   0  96  96   0  54  96   0  96   0  13  24   0
C |   0   0   0   0   0  24  96   0   0   0  96  96   0   0   0   0   0  96   0   0   0   0  96  13   0   0   0  96  57  24   0
G |   0  96   0   0  96  24   0   0   0  96   0   0   0  96  96   0   0   0   0  96   0   0   0  13   0   0   0   0  13  24   0
T |  96   0  96  96   0  24   0   0   0   0   0   0   0   0   0   0  96   0  96   0   0   0   0  16   0  96   0   0  13  24  96

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updated Mon Jan 5 17:09:33 2026