5h9f_ACI : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF E. COLI CASCADE BOUND TO A PAM-CONTAINING DSDNA TARGET AT 2.45 ANGSTROM RESOLUTION.
reference	van Erp et al. Nature 530 499 2016
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	X-ray (resolution=2.45, R-factor=?)
reference complex	5h9f_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5h9f_A interface=263,296,297,348,349,379,383,384,387,394,402,403,458,459,467, nllidnwipvrprnggkvqiinlqslycsrdqwrlslprddmelaalallvcigqiiapakddvefrhrimnpltedefqqliapwidmfylnhaehpfmqtkgvkandvtpmekllagvsgatncafvnqpgqgealcggctaialfnqanqapgfgggfksglrggtpvttfvrgidlrstvllnvltlprlqkqfptenqptwikpiksnesipassigfvrglfwqpahielcdpigigkcsccgqesnlrytgflkeKftftvnglwphphspclvtvkkgeveekflafTTsapswtqisrvvvdkiiqnegnrvaavvnqfrniapqsplelimggyrnnQAsilerrhdvlmgnvineivtvglgyktalRkalYTfaEgfknkdFkgagvsvHEtaerhfyrqsellipdvlanvnfsqadeviadlrdklhqlcemlfnqsvapyahHPklistlaLaratlykhlrelkp > 5h9f_C interface=148, deidamalyrawqqldngscaqirrvsepdelrdipafyrlvqpfgwenprhqqallrmvfclsagknvirhqdkktgislgralansgrinerrifqliradrtadmvqlrrllthaepvldwplmarmltwwgkrerqqlledfvLtt > 5h9f_I interface=189,199,201,203,204,206, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgsadavtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrmatsgmmtelgkvdgamsiahaitthqvdsdidWftavddlqeQgSaHLgTqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpitaqvkqmptleqlkswvrnng
interface signature	KTTQARYTEFHEHPL/L/WQSHLT

Estimated binding specificities ?

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# IC=11.668 IC/col=0.898 n_of_columns=13

specificity:

A |   7  96  96   0  96   9   0  24   0   0  24   7   7
C |  75   0   0   0   0  73  96  24   0  96  24   7  75
G |   7   0   0   0   0   7   0  24   0   0  24   9   7
T |   7   0   0  96   0   7   0  24  96   0  24  73   7

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updated Mon Jan 5 17:12:40 2026