5h9f_BDEFGHJ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF E. COLI CASCADE BOUND TO A PAM-CONTAINING DSDNA TARGET AT 2.45 ANGSTROM RESOLUTION.
reference	van Erp et al. Nature 530 499 2016
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	X-ray (resolution=2.45, R-factor=?)
reference complex	5h9f_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5h9f_B interface=21,22,25,95,117, deidamalyrawqqldngscAQirRvsepdelrdipafyrlvqpfgwenprhqqallrmvfclsagknvirhqdkktgislgralansgrinerRifqliradrtadmvqlrrlltHaepvldwplmarmltwwgkrerqqlledfvlttnkn > 5h9f_D interface=109,165,167, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgdmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsvkqmptleqlkswvrnng > 5h9f_E interface=109,165,167,198,210,212,213, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidWftavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfsltaqvkqmptleqlkswvrnng > 5h9f_F interface=109,165,167,198,199,210,212,213, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidWFtavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpitaqvkqmptleqlkswvrnnge > 5h9f_G interface=109,165,167,199,208,210,212,213, snfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidwFtavddlqeQgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsqvkqmptleqlkswvrnnge > 5h9f_H interface=23,109,167,199,208,210,212,213, snfinihvlishspsclnrddmNmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrmaTsgmmtelgkvdgamsiahaitthqvdsdidwFtavddlqeQgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsvkqmptleqlkswvrnng > 5h9f_J interface=85,103,105, mrsylilrlagpmqawgqptfegtrptgrfptrsgllgllgaclgiqrddtsslqalsesvqfavrcdelilddrrvsvtglrdYhtvlgaredyrglksheTiQtwreylcdasftvalwltphatmviselekavlkprytpylgrrscplthplflgtcqasdpqkallnyepvggdiyseesvtghhlkftardepmitlprqfasrewyvikgg
interface signature	AQRRH/AMT/AMTWSHL/AMTWFSHL/AMTFQSHL/NATFQSHL/YTQ

Estimated binding specificities ?

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# IC=31.950 IC/col=1.031 n_of_columns=31

specificity:

A |   0   0   0   0   0  24   0  96  96   0   0   0  96   0   0  96   0   0   0   0  96  96   9  24  24  24  67   0   9  24   0
C |   0   0   0   0   0  24  96   0   0   0  96  96   0   0   0   0   0  96   0   0   0   0  67  24  24  24   9  96  67  24   0
G |   0  96   0   0  96  24   0   0   0  96   0   0   0  96  96   0   0   0   0  96   0   0   9  24  24  24   9   0   9  24   0
T |  96   0  96  96   0  24   0   0   0   0   0   0   0   0   0   0  96   0  96   0   0   0  11  24  24  24  11   0  11  24  96

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updated Mon Jan 5 17:11:10 2026