5hlh_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE OVEROXIDIZED ABFR BOUND TO DNA
reference	Yang et al. 'J. 139 1598 2017
source	Staphylococcus epidermidis
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5hlg_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5hlh_A interface=63,64,65,67,68,89, qeqmrlanqlfsaynvsrlfaqfyekklkqfgitysqylvlltlweenpqtlnsigrhldlsSNTlTPmlkrleqsgwvkrerqqsdkRqliitltdngqqqqeavfeaisscydetkyvfeeleqtlkhliek > 5hlh_C interface=62,63,64,66,67,71,88, eqmrlanqlfsaynvsrlfaqfyekklkqfgitysqylvlltlweenpqtlnsigrhldlsSNTlTPmlkRleqsgwvkrerqqsdkRqliitltdngqqqqeavfeaissclydetkyvfeeleqtlkhli
interface signature	SNTTPR/SNTTPRR

Estimated binding specificities ?

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# IC=14.934 IC/col=0.747 n_of_columns=20

specificity:

A |   0   0  90   0  14  24  96  11  24  24  24  24   2   2  24  87  94   2   0   0
C |  96   0   2   2   2  24   0  14  24  24  24  24  78   2  24   2   0   5  96   0
G |   0  96   2   0  14  24   0  66  24  24  24  24  14   0  24   2   2   2   0  96
T |   0   0   2  94  66  24   0   5  24  24  24  24   2  92  24   5   0  87   0   0

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updated Tue Sep 10 04:39:14 2024