5hlh_FH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE OVEROXIDIZED ABFR BOUND TO DNA
reference	Yang et al. 'J. 139 1598 2017
source	Staphylococcus epidermidis
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5hlg_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5hlh_F interface=65,66,67,69,91, mkqeqmrlanqlfsaynvsrlfaqfyekklkqfgitysqylvlltlweenpqtlnsigrhldlsSNTlTpmlkrleqsgwvkrerqqsdkRqliitltdngqqqqeavfeaissclydetkyvfeeleqtlkhlie > 5hlh_H interface=65,66,67,69,70,91, mkqeqmrlanqlfsaynvsrlfaqfyekklkqfgitysqylvlltlweenpqtlnsigrhldlsSNTlTPmlkrleqsgwvkrerqqsdkRqliitltdngqqqqeavfeaissclydetkyvfeeleqtlkhlie
interface signature	SNTTR/SNTTPR

Estimated binding specificities ?

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# IC=14.291 IC/col=0.715 n_of_columns=20

specificity:

A |   0   2  88   0   9  24  88   4  24  24  24  24   7   2  24  78  94   2   0   0
C |  96   0   4   3   4  24   4   2  24  24  24  24  66   2  24  14   0   2  96   2
G |   0  93   2   0   5  24   2  86  24  24  24  24   9   4  24   2   2   4   0  94
T |   0   1   2  93  78  24   2   4  24  24  24  24  14  88  24   2   0  88   0   0

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updated Tue Sep 10 04:39:49 2024